Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   L2Z13_RS09040 Genome accession   NZ_CP091361
Coordinates   1859680..1860153 (-) Length   157 a.a.
NCBI ID   WP_001214067.1    Uniprot ID   A0A7U3Y304
Organism   Acinetobacter baumannii strain AB177-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1854680..1865153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z13_RS09025 (L2Z13_09025) pilX 1857309..1858127 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z13_RS09030 (L2Z13_09030) pilW 1858124..1859125 (-) 1002 WP_002132301.1 PilW family protein Machinery gene
  L2Z13_RS09035 (L2Z13_09035) pilV 1859126..1859686 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  L2Z13_RS09040 (L2Z13_09040) fimU 1859680..1860153 (-) 474 WP_001214067.1 GspH/FimT family pseudopilin Machinery gene
  L2Z13_RS09045 (L2Z13_09045) ispH 1860323..1861273 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z13_RS09050 (L2Z13_09050) gmk 1861396..1862025 (+) 630 WP_000015937.1 guanylate kinase -
  L2Z13_RS09055 (L2Z13_09055) rpoZ 1862098..1862376 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z13_RS09060 (L2Z13_09060) - 1862415..1862545 (+) 131 Protein_1779 hypothetical protein -
  L2Z13_RS09065 (L2Z13_09065) - 1862585..1864690 (+) 2106 WP_029424120.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16823.40 Da        Isoelectric Point: 8.5355

>NTDB_id=650354 L2Z13_RS09040 WP_001214067.1 1859680..1860153(-) (fimU) [Acinetobacter baumannii strain AB177-VUB]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=650354 L2Z13_RS09040 WP_001214067.1 1859680..1860153(-) (fimU) [Acinetobacter baumannii strain AB177-VUB]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGGTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y304

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994