Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   L2Z14_RS17490 Genome accession   NZ_CP091360
Coordinates   3635258..3636118 (+) Length   286 a.a.
NCBI ID   WP_001152269.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB179-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3630258..3641118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z14_RS17430 (L2Z14_17430) secG 3630864..3631193 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  L2Z14_RS17435 (L2Z14_17435) tpiA 3631206..3632000 (-) 795 WP_077108833.1 triose-phosphate isomerase -
  L2Z14_RS17440 (L2Z14_17440) pilB 3632290..3634002 (+) 1713 WP_001274989.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L2Z14_RS17445 (L2Z14_17445) pilC 3634032..3635258 (+) 1227 WP_000279215.1 type II secretion system F family protein Machinery gene
  L2Z14_RS17490 pilD 3635258..3636118 (+) 861 WP_001152269.1 A24 family peptidase Machinery gene
  L2Z14_RS17460 (L2Z14_17460) coaE 3636120..3636716 (+) 597 WP_000874124.1 dephospho-CoA kinase -
  L2Z14_RS17465 (L2Z14_17465) - 3636713..3637627 (-) 915 WP_077108832.1 DMT family transporter -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32029.45 Da        Isoelectric Point: 6.6663

>NTDB_id=650336 L2Z14_RS17490 WP_001152269.1 3635258..3636118(+) (pilD) [Acinetobacter baumannii strain AB179-VUB]
MQDIIAYFIQNLTALYIAVALMSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IPWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=650336 L2Z14_RS17490 WP_001152269.1 3635258..3636118(+) (pilD) [Acinetobacter baumannii strain AB179-VUB]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCATGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCCTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.601

100

0.986
  pilD Acinetobacter nosocomialis M2

98.252

100

0.983
  pilD Vibrio cholerae strain A1552

53.676

95.105

0.51
  pilD Vibrio campbellii strain DS40M4

52.399

94.755

0.497
  pilD Neisseria gonorrhoeae MS11

47.348

92.308

0.437