Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   L2Z14_RS03325 Genome accession   NZ_CP091360
Coordinates   686842..687324 (+) Length   160 a.a.
NCBI ID   WP_226200464.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB179-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 681842..692324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z14_RS03315 (L2Z14_03315) - 682694..682963 (+) 270 Protein_632 pilus assembly protein -
  L2Z14_RS03320 (L2Z14_03320) pilY1 682975..686829 (+) 3855 WP_000768944.1 PilC/PilY family type IV pilus protein Machinery gene
  L2Z14_RS03325 (L2Z14_03325) pilY2 686842..687324 (+) 483 WP_226200464.1 type IV pilin protein Machinery gene
  L2Z14_RS03330 (L2Z14_03330) pilE 687321..687746 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene
  L2Z14_RS03335 (L2Z14_03335) rpsP 687893..688144 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  L2Z14_RS03340 (L2Z14_03340) rimM 688164..688712 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  L2Z14_RS03345 (L2Z14_03345) trmD 688758..689498 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  L2Z14_RS03350 (L2Z14_03350) rplS 689706..690074 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  L2Z14_RS03355 (L2Z14_03355) - 690126..691067 (-) 942 WP_085916958.1 triacylglycerol lipase -
  L2Z14_RS03360 (L2Z14_03360) - 691182..692216 (-) 1035 WP_001189446.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17585.83 Da        Isoelectric Point: 8.8368

>NTDB_id=650310 L2Z14_RS03325 WP_226200464.1 686842..687324(+) (pilY2) [Acinetobacter baumannii strain AB179-VUB]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDHTTTGNLLTNSASNGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=650310 L2Z14_RS03325 WP_226200464.1 686842..687324(+) (pilY2) [Acinetobacter baumannii strain AB179-VUB]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATCATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

92.5

100

0.925
  comE Acinetobacter baylyi ADP1

38.953

100

0.419