Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   L2Z14_RS03290 Genome accession   NZ_CP091360
Coordinates   678793..679266 (+) Length   157 a.a.
NCBI ID   WP_001214068.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB179-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 673793..684266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z14_RS03265 (L2Z14_03265) - 674257..676362 (-) 2106 WP_020753492.1 HD domain-containing protein -
  L2Z14_RS03270 (L2Z14_03270) - 676402..676531 (-) 130 Protein_623 hypothetical protein -
  L2Z14_RS03275 (L2Z14_03275) rpoZ 676570..676848 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z14_RS03280 (L2Z14_03280) gmk 676921..677550 (-) 630 WP_000015936.1 guanylate kinase -
  L2Z14_RS03285 (L2Z14_03285) ispH 677673..678623 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z14_RS03290 (L2Z14_03290) fimU 678793..679266 (+) 474 WP_001214068.1 GspH/FimT family pseudopilin Machinery gene
  L2Z14_RS03295 (L2Z14_03295) pilV 679260..679820 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  L2Z14_RS03300 (L2Z14_03300) pilW 679821..680822 (+) 1002 WP_000079199.1 PilW family protein Machinery gene
  L2Z14_RS03305 (L2Z14_03305) - 680819..681370 (+) 552 Protein_630 PilX N-terminal domain-containing pilus assembly protein -
  L2Z14_RS03310 (L2Z14_03310) - 681409..682617 (-) 1209 WP_000343018.1 IS256-like element ISAba26 family transposase -
  L2Z14_RS03315 (L2Z14_03315) - 682694..682963 (+) 270 Protein_632 pilus assembly protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16851.46 Da        Isoelectric Point: 8.5355

>NTDB_id=650306 L2Z14_RS03290 WP_001214068.1 678793..679266(+) (fimU) [Acinetobacter baumannii strain AB179-VUB]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=650306 L2Z14_RS03290 WP_001214068.1 678793..679266(+) (fimU) [Acinetobacter baumannii strain AB179-VUB]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994