Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   L2Z14_RS03295 Genome accession   NZ_CP091360
Coordinates   679260..679820 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB179-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 674260..684820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z14_RS03270 (L2Z14_03270) - 676402..676531 (-) 130 Protein_623 hypothetical protein -
  L2Z14_RS03275 (L2Z14_03275) rpoZ 676570..676848 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z14_RS03280 (L2Z14_03280) gmk 676921..677550 (-) 630 WP_000015936.1 guanylate kinase -
  L2Z14_RS03285 (L2Z14_03285) ispH 677673..678623 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z14_RS03290 (L2Z14_03290) fimU 678793..679266 (+) 474 WP_001214068.1 GspH/FimT family pseudopilin Machinery gene
  L2Z14_RS03295 (L2Z14_03295) pilV 679260..679820 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  L2Z14_RS03300 (L2Z14_03300) pilW 679821..680822 (+) 1002 WP_000079199.1 PilW family protein Machinery gene
  L2Z14_RS03305 (L2Z14_03305) - 680819..681370 (+) 552 Protein_630 PilX N-terminal domain-containing pilus assembly protein -
  L2Z14_RS03310 (L2Z14_03310) - 681409..682617 (-) 1209 WP_000343018.1 IS256-like element ISAba26 family transposase -
  L2Z14_RS03315 (L2Z14_03315) - 682694..682963 (+) 270 Protein_632 pilus assembly protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=650307 L2Z14_RS03295 WP_002194578.1 679260..679820(+) (pilV) [Acinetobacter baumannii strain AB179-VUB]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=650307 L2Z14_RS03295 WP_002194578.1 679260..679820(+) (pilV) [Acinetobacter baumannii strain AB179-VUB]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTCGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414