Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   L2Z14_RS03165 Genome accession   NZ_CP091360
Coordinates   651415..652155 (+) Length   246 a.a.
NCBI ID   WP_000076097.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB179-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 646415..657155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z14_RS03150 (L2Z14_03150) ponA 647003..649558 (-) 2556 WP_000736683.1 penicillin-binding protein PBP1a -
  L2Z14_RS03155 (L2Z14_03155) pilM 649719..650777 (+) 1059 WP_005119265.1 pilus assembly protein PilM Machinery gene
  L2Z14_RS03160 (L2Z14_03160) pilN 650777..651418 (+) 642 WP_000201231.1 PilN domain-containing protein Machinery gene
  L2Z14_RS03165 (L2Z14_03165) pilO 651415..652155 (+) 741 WP_000076097.1 type 4a pilus biogenesis protein PilO Machinery gene
  L2Z14_RS03170 (L2Z14_03170) pilP 652166..652693 (+) 528 WP_226200502.1 pilus assembly protein PilP Machinery gene
  L2Z14_RS03175 (L2Z14_03175) pilQ 652756..654921 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  L2Z14_RS03180 (L2Z14_03180) aroK 654933..655502 (+) 570 WP_000643712.1 shikimate kinase AroK -
  L2Z14_RS03185 (L2Z14_03185) aroB 655531..656613 (+) 1083 WP_226200500.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27785.55 Da        Isoelectric Point: 4.8357

>NTDB_id=650302 L2Z14_RS03165 WP_000076097.1 651415..652155(+) (pilO) [Acinetobacter baumannii strain AB179-VUB]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGFFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTIHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=650302 L2Z14_RS03165 WP_000076097.1 651415..652155(+) (pilO) [Acinetobacter baumannii strain AB179-VUB]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTTTTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATTCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.187

100

0.992
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679