Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG842_RS34160 Genome accession   NZ_CP107960
Coordinates   7611146..7611796 (-) Length   216 a.a.
NCBI ID   WP_266735364.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00376     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7606146..7616796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG842_RS34140 (OG842_34130) - 7606915..7607745 (-) 831 WP_266735370.1 alpha/beta fold hydrolase -
  OG842_RS34145 (OG842_34135) sigJ 7607900..7608793 (+) 894 WP_266735369.1 RNA polymerase sigma factor SigJ -
  OG842_RS34150 (OG842_34140) - 7609055..7609822 (+) 768 WP_266735368.1 GntR family transcriptional regulator -
  OG842_RS34155 (OG842_34145) - 7609888..7611045 (-) 1158 WP_266735366.1 ROK family protein -
  OG842_RS34160 (OG842_34150) vraR 7611146..7611796 (-) 651 WP_266735364.1 response regulator transcription factor Regulator
  OG842_RS34165 (OG842_34155) - 7611961..7613154 (-) 1194 WP_266735363.1 histidine kinase -
  OG842_RS34170 (OG842_34160) - 7613263..7614201 (+) 939 WP_266735361.1 ATP-binding cassette domain-containing protein -
  OG842_RS34175 (OG842_34165) - 7614204..7614941 (+) 738 WP_266735360.1 ABC transporter permease -
  OG842_RS34180 (OG842_34170) - 7615039..7615476 (+) 438 WP_266735358.1 hypothetical protein -
  OG842_RS34185 (OG842_34175) mug 7615585..7616229 (-) 645 WP_266735356.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23048.82 Da        Isoelectric Point: 5.1341

>NTDB_id=650280 OG842_RS34160 WP_266735364.1 7611146..7611796(-) (vraR) [Streptomyces sp. NBC_00376]
MPVSVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAGDGAAVIPLLHQLRPDVVAMDVRMPLMDGIEATRVVLRTVPDPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPAAVRQLAAEYGTSKARAVMDRAALTERESVV
LRLMARGLSNAEIAAKLVVGVETVKTHVSAVLAKLGARDRTQAVIAAYESGFVAPG

Nucleotide


Download         Length: 651 bp        

>NTDB_id=650280 OG842_RS34160 WP_266735364.1 7611146..7611796(-) (vraR) [Streptomyces sp. NBC_00376]
ATGCCGGTTAGCGTACTTCTGGTCGACGACGAGCCCCTCGTCCGCGCGGGGTTGCGTGCGGTCCTTGAGGCCCAGCCCGA
TATCGAGGTGGTGGGCGAGGCGGGCGACGGCGCCGCCGTGATCCCTCTGCTGCATCAGCTGCGCCCCGATGTGGTGGCCA
TGGATGTCAGGATGCCGTTGATGGACGGGATCGAGGCAACCCGGGTGGTGCTGCGTACGGTGCCTGATCCGCCGAAGATC
CTTGTGGTGACCACCTTCGAGAACGACGAGTACGTCTATGAGGCGTTGCGTGCCGGTGCGGACGGCTTCCTCCTCAAACG
TGCCCGGCCCGCCGAGATCGTGCATGCGGTGCGTCTGGTCGCCGAAGGCGAGTCGCTGCTCTTCCCGGCGGCGGTCCGGC
AGCTCGCCGCCGAGTACGGGACGAGCAAGGCGCGCGCGGTCATGGACCGGGCAGCGCTGACCGAGCGGGAGTCCGTGGTC
CTGCGGCTGATGGCCCGTGGCCTGTCGAACGCGGAGATCGCTGCCAAGCTCGTGGTCGGCGTCGAAACGGTGAAGACCCA
TGTCAGTGCTGTACTGGCCAAGTTGGGCGCGAGGGACCGTACCCAGGCGGTGATCGCGGCATATGAATCCGGGTTCGTCG
CCCCGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-206)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.723

98.611

0.421
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.375