Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   L2Z16_RS16985 Genome accession   NZ_CP091359
Coordinates   3545660..3546478 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AB180-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3540660..3551478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z16_RS16970 (L2Z16_16970) pilE 3540877..3541302 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  L2Z16_RS16975 (L2Z16_16975) pilY2 3541299..3541781 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  L2Z16_RS16980 (L2Z16_16980) pilY1 3541794..3545648 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  L2Z16_RS16985 (L2Z16_16985) pilX 3545660..3546478 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z16_RS16990 (L2Z16_16990) pilW 3546475..3547476 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  L2Z16_RS16995 (L2Z16_16995) pilV 3547477..3548037 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  L2Z16_RS17000 (L2Z16_17000) fimU 3548031..3548504 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  L2Z16_RS17005 (L2Z16_17005) ispH 3548674..3549624 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z16_RS17010 (L2Z16_17010) gmk 3549747..3550376 (+) 630 WP_000015937.1 guanylate kinase -
  L2Z16_RS17015 (L2Z16_17015) rpoZ 3550449..3550727 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z16_RS17020 (L2Z16_17020) - 3550766..3550895 (+) 130 Protein_3313 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=650279 L2Z16_RS16985 WP_000149374.1 3545660..3546478(-) (pilX) [Acinetobacter baumannii strain AB180-VUB]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=650279 L2Z16_RS16985 WP_000149374.1 3545660..3546478(-) (pilX) [Acinetobacter baumannii strain AB180-VUB]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993