Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG842_RS30485 Genome accession   NZ_CP107960
Coordinates   6750397..6751041 (+) Length   214 a.a.
NCBI ID   WP_266736321.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00376     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6745397..6756041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG842_RS30475 (OG842_30465) - 6747972..6748742 (-) 771 WP_266736324.1 transglycosylase SLT domain-containing protein -
  OG842_RS30480 (OG842_30470) - 6749259..6750404 (+) 1146 WP_266736323.1 GAF domain-containing sensor histidine kinase -
  OG842_RS30485 (OG842_30475) vraR 6750397..6751041 (+) 645 WP_266736321.1 response regulator transcription factor Regulator
  OG842_RS30490 (OG842_30480) - 6751214..6751462 (+) 249 WP_266736319.1 chaplin family protein -
  OG842_RS30495 (OG842_30485) - 6751599..6752384 (-) 786 WP_266736318.1 hypothetical protein -
  OG842_RS30500 (OG842_30490) - 6752538..6753335 (+) 798 WP_266736317.1 ABC transporter ATP-binding protein -
  OG842_RS30505 (OG842_30495) - 6753434..6753862 (+) 429 WP_266736316.1 NfeD family protein -
  OG842_RS30510 (OG842_30500) - 6754009..6754938 (+) 930 WP_093895790.1 SPFH domain-containing protein -
  OG842_RS30515 (OG842_30505) - 6755000..6755767 (+) 768 WP_266736314.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23085.34 Da        Isoelectric Point: 5.3843

>NTDB_id=650273 OG842_RS30485 WP_266736321.1 6750397..6751041(+) (vraR) [Streptomyces sp. NBC_00376]
MADKIIRVLLVDDHQVVRRGLRTFLEIQDDIEVVGEAADGAEGVARTEELRPDVVLMDIKMPGTDGIEALRRLRELENPA
KVLIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLAQEDSGSGTGRGSTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGAAG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=650273 OG842_RS30485 WP_266736321.1 6750397..6751041(+) (vraR) [Streptomyces sp. NBC_00376]
GTGGCTGACAAGATCATCAGGGTGCTGCTGGTCGACGACCACCAGGTGGTCCGCCGTGGTCTGCGTACGTTCCTGGAGAT
CCAGGACGACATAGAGGTGGTCGGCGAGGCGGCCGACGGTGCCGAGGGGGTGGCCAGGACCGAGGAGCTCCGCCCCGATG
TGGTCCTGATGGACATCAAGATGCCCGGCACCGACGGCATCGAGGCGCTGCGCAGGCTGCGCGAGCTGGAGAACCCGGCC
AAGGTCCTCATCGTCACCAGCTTCACCGAGCAGCGCACCGTGGTCCCCGCCCTGCGCGCCGGAGCCTCCGGTTATGTGTA
CAAGGACGTCGACCCGGACGCCCTGGCCGGTGCGATCCGCTCGGTGCACGCGGGCCACGTCCTGCTCCAGCCGGAGGTAG
CGGGGGCCCTGCTCGCCCAGGAGGACTCGGGCAGCGGTACGGGCCGGGGGAGCACGCTCACCGAACGGGAGCGGGAGGTG
CTGGGCCTGATCGCCGACGGCCGCTCCAACCGTGAGATCGCGCGAGCGCTGGTCCTCTCCGAGAAGACCGTCAAGACGCA
CGTCTCGAACATCCTGATGAAACTGGACCTCTCGGACCGGACCCAGGCCGCCCTGTGGGCCGTCCGGCACGGGGCAGCGG
GCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.146

96.262

0.435
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.407