Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG842_RS26725 Genome accession   NZ_CP107960
Coordinates   5952597..5954330 (-) Length   577 a.a.
NCBI ID   WP_266733191.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00376     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5947597..5959330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG842_RS26715 (OG842_26705) - 5949495..5950598 (+) 1104 WP_266733189.1 RNA polymerase sigma factor -
  OG842_RS26720 (OG842_26710) - 5950666..5952597 (-) 1932 WP_266733190.1 ABC transporter ATP-binding protein -
  OG842_RS26725 (OG842_26715) rcrP 5952597..5954330 (-) 1734 WP_266733191.1 ABC transporter ATP-binding protein Regulator
  OG842_RS26730 (OG842_26720) - 5954499..5955944 (-) 1446 WP_266733192.1 FGGY family carbohydrate kinase -
  OG842_RS26735 (OG842_26725) - 5956012..5956311 (-) 300 WP_266733193.1 YtxH domain-containing protein -
  OG842_RS26755 (OG842_26745) - 5957116..5957688 (-) 573 WP_266733195.1 hypothetical protein -
  OG842_RS26760 (OG842_26750) - 5957841..5958434 (-) 594 WP_266733197.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62749.89 Da        Isoelectric Point: 5.1498

>NTDB_id=650266 OG842_RS26725 WP_266733191.1 5952597..5954330(-) (rcrP) [Streptomyces sp. NBC_00376]
MLIKLLRAYLGPYRKPILLLVLLQLLQTCASLYLPTLNADIIDNGVVQGDTGYILEFGGIMIAVSIAQVVCNMGAVYFGA
RTASALGRDIRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEERFRGSNTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVIWFGAQRIDSGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETESSVVP
PVKPVRKLLARGHLEVRGADFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPALLARTVGLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVTALEHGLDAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALTQETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=650266 OG842_RS26725 WP_266733191.1 5952597..5954330(-) (rcrP) [Streptomyces sp. NBC_00376]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGTCCGTACAGAAAACCCATCCTGCTGCTGGTCCTCCTCCAACTGCTGCA
GACCTGCGCCAGCCTCTACCTGCCCACGCTGAACGCCGACATCATCGACAACGGTGTCGTGCAGGGCGACACGGGCTACA
TCCTCGAATTCGGCGGCATCATGATCGCCGTCAGCATCGCCCAGGTGGTCTGCAACATGGGGGCCGTCTACTTCGGCGCC
CGTACCGCGTCCGCGCTCGGCCGCGACATCCGAGCGTCGGTCTTCGACCGGGTGCAGTCGTTCTCGGCCCGTGAGGTGGG
GCGCTTCGGGGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACGTTCA
CACTGATGGTGTCGGCCCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCCGCGGTG
CTGCTCGCTGTGGTGCCGGTGCTCGGCATCGCGGTGAGCCTGATCGTGCGGCGGATGCGCCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGGGACG
GCTACGAGGAGGAGCGGTTCCGCGGCTCCAACACCGAGCTGACGGATGTGGCGCTGTCCACGGGCCGGCTGATGGCACTG
ATGTTCCCCACCGTGATGACGGTCGTGAACGTCTCGTCGATCGCGGTGATCTGGTTCGGTGCCCAGCGCATCGACAGCGG
CGGCATGGAGATCGGCGCACTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCCAGCGTGGTCCCG
CCCGTGAAGCCGGTCCGCAAGCTCCTCGCCCGCGGTCATCTGGAGGTGCGCGGCGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGTCGGTGGATCTGGTGGCCCGCCCCGGCGAGACCACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACTCTGCTCGGTCTCGTACCGCGGCTGTTCGACGTGACGGACGGCCAGGTGCTGGTCGACGGCACGGATGTGCGG
ACGCTGGAGCCGGCGCTGCTGGCGAGGACCGTGGGTCTCGTTCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
GAACCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCACGGCGCTGGAGCACGGTCTGGACGCGCCGATCTCGCAGGGCGGCACCAATGTGTCGGGCGGGCAGCGGCAGCGTCTG
GCCATCGCCAGGACGCTGGTGCAGCGCCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCGCTCGACTACGCCACCGA
CGCCGCGCTGCGCGGGGCCCTCACCCAGGAGACGGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GCGACGCTGACCGGATCCTGGTTCTGGACGAGGGCCGGGTGGTCGGCTCCGGCACCCATCACGAGCTGATGGACGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.794

100

0.402