Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG842_RS22095 Genome accession   NZ_CP107960
Coordinates   4882673..4884085 (-) Length   470 a.a.
NCBI ID   WP_266731938.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00376     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4877673..4889085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG842_RS22070 (OG842_22050) - 4877886..4878500 (-) 615 WP_266731931.1 SigE family RNA polymerase sigma factor -
  OG842_RS22075 (OG842_22055) - 4878677..4879579 (-) 903 WP_266731933.1 A/G-specific adenine glycosylase -
  OG842_RS22080 (OG842_22060) - 4879735..4880382 (-) 648 WP_328512445.1 phosphatase PAP2 family protein -
  OG842_RS22085 (OG842_22065) - 4880567..4881379 (+) 813 WP_266731935.1 hypothetical protein -
  OG842_RS22090 (OG842_22070) disA 4881468..4882592 (-) 1125 WP_266731937.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG842_RS22095 (OG842_22075) radA/sms 4882673..4884085 (-) 1413 WP_266731938.1 DNA repair protein RadA Machinery gene
  OG842_RS22100 (OG842_22080) - 4884303..4886183 (+) 1881 WP_266731940.1 hypothetical protein -
  OG842_RS22105 (OG842_22085) - 4886255..4887115 (-) 861 WP_266731942.1 hypothetical protein -
  OG842_RS22110 (OG842_22090) - 4887156..4888109 (+) 954 WP_266731943.1 Ppx/GppA phosphatase family protein -
  OG842_RS22115 (OG842_22095) - 4888216..4889043 (+) 828 WP_266731945.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49479.57 Da        Isoelectric Point: 8.4954

>NTDB_id=650256 OG842_RS22095 WP_266731938.1 4882673..4884085(-) (radA/sms) [Streptomyces sp. NBC_00376]
MAARTKTAKDRPSYRCSECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYVTAEESASQVRLRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKEGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVTEVANMGDALRVLPRRSRAQAPQEESARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=650256 OG842_RS22095 WP_266731938.1 4882673..4884085(-) (radA/sms) [Streptomyces sp. NBC_00376]
ATGGCTGCCCGTACGAAAACCGCGAAGGACCGGCCGTCCTACCGCTGCTCCGAATGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGGACCACCGCGGCCG
GCCGGGTCAGCACCGCCGCGCTCCCCATCGGCCAGGTCGACAGCCGGCAGGCCACCGCCCGGTCCACCGGCGTCGGCGAG
CTGGACCGGGTGCTCGGCGGCGGTCTCGTGCCGGGCGCCGTGGTGCTCGTCGCGGGCGAGCCGGGCGTCGGGAAGTCGAC
GCTGCTGCTGGACGTCGCCGCCAAGGCGGCGAGCGACGAGCACCGCACGCTCTACGTCACCGCCGAGGAGTCCGCGAGCC
AGGTGCGGCTGCGTGCCGACCGGATCCGGGCGATCAACGACCATCTGTACCTGGCCGCCGAGACCGACCTGTCCGCGGTC
CTCGGCCATCTCGACGCCGTCAAGCCCTCGCTCCTCATCCTCGACTCCGTGCAGACCGTCGCCTCGCCGGAGATCGACGG
GGCGCCGGGCGGCATGGCGCAGGTCCGGGAGGTCGCCGGGGCCCTCATCCGGGCCTCCAAGGAGCGCGGCATGTCGACGC
TCCTGGTCGGCCATGTCACCAAGGAGGGGGCGATCGCGGGGCCCCGGCTGCTGGAGCACCTCGTCGACGTGGTGCTGTCC
TTCGAGGGCGACCGCCACGCCCGCCTGCGGCTCGTACGGGGCGTCAAGAACAGGTACGGCGCGACCGACGAGGTGGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCCGGCCTGTTCCTCACCCGGCGCGACGAGCCCGTGC
CCGGCACCTGTCTGACCGTCACCCTGGAGGGCAAGCGGCCGCTCGTCGCCGAAGTGCAGGCGCTGACGGTCGATTCCCAG
ATCCCTTCGCCCCGGCGCACCACCTCCGGCCTGGAGACGTCCCGGGTGTCGATGATGCTCGCGGTCCTGGAGCAGCGCGG
CCGGATCAGCTCGCTGGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGTGTGAAGCTCTCCGAGCCCGCCGCGGACC
TCGCGGTCGCGCTGGCGCTGGCCAGTGCCGCGAGCGACACCCCGCTGCCGAAGAACCTGGTGGCAATCGGCGAGGTGGGC
CTCGCGGGCGAGGTCAGAAGGGTCACCGGGGTCCAGCGCAGGCTGGCCGAGGCGCACCGGCTGGGCTTCACGCACGCGCT
GGTCCCGACCGACCCGGGCAAGGTCCCGGCCGGTATGAAGGTCACAGAAGTCGCCAACATGGGCGACGCGCTGAGAGTCC
TCCCGCGCCGGTCTCGCGCACAGGCCCCCCAGGAGGAGAGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

96.383

0.423
  radA Streptococcus pneumoniae Rx1

43.046

96.383

0.415
  radA Streptococcus pneumoniae D39

43.046

96.383

0.415
  radA Streptococcus pneumoniae R6

43.046

96.383

0.415
  radA Streptococcus pneumoniae TIGR4

43.046

96.383

0.415
  radA Streptococcus mitis SK321

44.522

91.277

0.406
  radA Streptococcus mitis NCTC 12261

44.522

91.277

0.406