Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG842_RS21330 Genome accession   NZ_CP107960
Coordinates   4706999..4707598 (+) Length   199 a.a.
NCBI ID   WP_266417409.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00376     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4701999..4712598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG842_RS21305 (OG842_21285) - 4702429..4703802 (+) 1374 WP_266731725.1 aspartate aminotransferase family protein -
  OG842_RS21310 (OG842_21290) - 4703922..4704668 (+) 747 WP_266731727.1 GntR family transcriptional regulator -
  OG842_RS21315 (OG842_21295) - 4704792..4705442 (+) 651 WP_266731729.1 hypothetical protein -
  OG842_RS21320 (OG842_21300) - 4705487..4706248 (-) 762 WP_266731731.1 SLATT domain-containing protein -
  OG842_RS21325 (OG842_21305) - 4706606..4706941 (+) 336 WP_072487886.1 YbaB/EbfC family nucleoid-associated protein -
  OG842_RS21330 (OG842_21310) recR 4706999..4707598 (+) 600 WP_266417409.1 recombination mediator RecR Machinery gene
  OG842_RS21335 (OG842_21315) - 4707730..4708389 (+) 660 WP_266731732.1 DUF5063 domain-containing protein -
  OG842_RS21340 (OG842_21320) - 4708418..4708711 (-) 294 WP_266731733.1 hypothetical protein -
  OG842_RS21345 (OG842_21325) - 4708958..4711042 (+) 2085 WP_266731734.1 LamG domain-containing protein -
  OG842_RS21350 (OG842_21330) - 4711262..4712533 (+) 1272 WP_266731735.1 aspartate kinase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21857.13 Da        Isoelectric Point: 5.1558

>NTDB_id=650251 OG842_RS21330 WP_266417409.1 4706999..4707598(+) (recR) [Streptomyces sp. NBC_00376]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCSVCGNVAQQEQCNICRDARRDPSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=650251 OG842_RS21330 WP_266417409.1 4706999..4707598(+) (recR) [Streptomyces sp. NBC_00376]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCGACCGATGTGCGCCGCCTCGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GGTTCTGTTCGGTCTGCGGCAACGTCGCCCAGCAGGAGCAGTGCAACATCTGCCGGGACGCGCGCCGGGACCCGTCGGTG
ATCTGTGTGGTCGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACCCGTGAGTTCCGGGGCCGGTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGATCTGCGCATCCGCGAGCTGCTCGCCCGCCTCGCCGACGGCT
CGATCACGGAACTGATCCTGGCGACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGGTCAAG
CCGATGGGCCTGCGGGTCACCAGACTGGCCAGCGGCCTGCCGGTCGGCGGCGACCTGGAGTACGCGGACGAGGTCACCCT
GGGCCGCGCCTTCGAGGGGAGGCGCCTGCTCGATGTGTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452