Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG842_RS21190 Genome accession   NZ_CP107960
Coordinates   4673929..4674612 (+) Length   227 a.a.
NCBI ID   WP_266731689.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00376     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4668929..4679612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG842_RS21170 (OG842_21150) - 4669421..4670269 (+) 849 WP_266731682.1 tryptophan 2,3-dioxygenase family protein -
  OG842_RS21175 (OG842_21155) kynU 4670262..4671494 (+) 1233 WP_266731683.1 kynureninase -
  OG842_RS21180 (OG842_21160) - 4671616..4672491 (+) 876 WP_266731685.1 alpha/beta hydrolase -
  OG842_RS21185 (OG842_21165) - 4672622..4673923 (+) 1302 WP_328512432.1 histidine kinase -
  OG842_RS21190 (OG842_21170) vraR 4673929..4674612 (+) 684 WP_266731689.1 response regulator transcription factor Regulator
  OG842_RS21195 (OG842_21175) - 4674752..4675981 (+) 1230 WP_266731691.1 cytochrome P450 -
  OG842_RS21200 (OG842_21180) - 4676075..4676404 (-) 330 WP_266731693.1 hypothetical protein -
  OG842_RS21205 (OG842_21185) - 4676530..4678164 (-) 1635 WP_328512433.1 ABC transporter permease -
  OG842_RS21210 (OG842_21190) - 4678161..4679093 (-) 933 WP_328512434.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24296.10 Da        Isoelectric Point: 4.9545

>NTDB_id=650250 OG842_RS21190 WP_266731689.1 4673929..4674612(+) (vraR) [Streptomyces sp. NBC_00376]
MSTPTAPSPSIRVLIVDDQMMVREGFSVLLNAMPGIEVVGEAVDGRQAIAQVAALRPDVVLMDIRMPELNGIEATREIVA
ADADAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPTVTKRLINEFSKLAEAPRSPALAR
VGDLTERETEVLVLIAQGRSNAEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPS

Nucleotide


Download         Length: 684 bp        

>NTDB_id=650250 OG842_RS21190 WP_266731689.1 4673929..4674612(+) (vraR) [Streptomyces sp. NBC_00376]
ATGAGCACTCCCACCGCCCCGTCCCCGTCCATCCGGGTGCTGATCGTGGACGACCAGATGATGGTCCGTGAGGGCTTTTC
GGTACTTCTCAACGCCATGCCGGGGATCGAGGTCGTCGGCGAGGCGGTCGACGGCCGGCAGGCCATCGCACAGGTCGCGG
CCCTGCGCCCCGACGTGGTCCTGATGGACATCCGGATGCCGGAACTCAACGGCATCGAGGCCACCCGCGAGATCGTCGCC
GCCGACGCGGACGCCAAGGTCCTGGTGCTGACCACCTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGCGCCGGGGC
TTCCGGCTTCCTCCTCAAGGACGCCTCCGCACGCCAGCTCGCGGACGGGGTACGGGTGGTGGCCGCGGGCGAGGCGCTGC
TCGCGCCGACCGTCACCAAGCGGCTGATCAACGAGTTCTCGAAGCTCGCGGAGGCCCCGCGCTCACCCGCGCTGGCACGG
GTCGGCGACCTCACCGAGCGCGAGACGGAGGTGCTCGTCCTCATCGCGCAGGGCCGGTCCAACGCCGAGATCGCCTCGCA
TCTGGTGGTGGCCGAGTCCACCATCAAGACCCATGTGAGTCGGATCCTGGTGAAGCTGGGGCTGCGCGACCGCACTCAGG
CGGCCGTCTTCGCGTACGAGGCCCGCCTGGTCACACCTTCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(164-218)

Response regulator receiver domain (Response_reg)

(13-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.116

94.714

0.427
  degU Bacillus subtilis subsp. subtilis str. 168

43.119

96.035

0.414