Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG842_RS19050 Genome accession   NZ_CP107960
Coordinates   4221272..4221964 (+) Length   230 a.a.
NCBI ID   WP_266731099.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00376     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4216272..4226964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG842_RS19035 (OG842_19010) - 4217409..4218599 (-) 1191 WP_266731095.1 serine hydrolase domain-containing protein -
  OG842_RS19040 (OG842_19015) - 4218689..4219888 (-) 1200 WP_266731096.1 serine hydrolase domain-containing protein -
  OG842_RS19045 (OG842_19020) - 4220028..4221275 (+) 1248 WP_266731097.1 histidine kinase -
  OG842_RS19050 (OG842_19025) vraR 4221272..4221964 (+) 693 WP_266731099.1 response regulator transcription factor Regulator
  OG842_RS19055 (OG842_19030) - 4222374..4222871 (+) 498 WP_266731101.1 SigE family RNA polymerase sigma factor -
  OG842_RS19060 (OG842_19035) - 4222920..4223258 (-) 339 WP_266731103.1 hypothetical protein -
  OG842_RS19065 (OG842_19040) - 4223474..4224607 (+) 1134 WP_266733685.1 mannosyltransferase family protein -
  OG842_RS19070 (OG842_19045) - 4224900..4225583 (+) 684 WP_266731105.1 hypothetical protein -
  OG842_RS19075 (OG842_19050) - 4225736..4225972 (+) 237 WP_266731107.1 ferredoxin -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 23789.35 Da        Isoelectric Point: 4.7886

>NTDB_id=650245 OG842_RS19050 WP_266731099.1 4221272..4221964(+) (vraR) [Streptomyces sp. NBC_00376]
MSGSDTGDATALPAVSLLIADDDEVTRSGLGMLLAAQPGITVVGEAADGVEAVERARSLRPDVVLMDVRMPRRNGIEATR
QLLAEAADPPKVVVITTFENDGYVTAALSAGASGFVLKRLPVRRIAEAVRVVAAGEAVLFPAALGRMVAARPLGSAEALP
QADLTGREEEVLRLMATGLSNPEIAGSLTVSLETVKTHVGNVLTKLGAQNRTHAVVIAYESGLMVPGFTG

Nucleotide


Download         Length: 693 bp        

>NTDB_id=650245 OG842_RS19050 WP_266731099.1 4221272..4221964(+) (vraR) [Streptomyces sp. NBC_00376]
GTGAGCGGATCCGACACGGGCGATGCCACGGCCCTTCCCGCCGTCAGCCTTCTGATCGCCGACGACGACGAGGTGACCCG
CAGCGGCCTGGGCATGCTGCTCGCCGCACAGCCGGGGATCACGGTGGTCGGCGAGGCCGCCGACGGCGTCGAGGCGGTCG
AACGGGCGCGGAGCCTGCGGCCGGACGTGGTCCTGATGGACGTCCGGATGCCGCGCCGCAACGGGATCGAGGCCACCCGC
CAGCTGCTGGCCGAGGCGGCCGACCCGCCGAAGGTCGTGGTGATCACCACCTTCGAGAACGACGGCTACGTCACCGCCGC
CCTCAGCGCGGGCGCCAGCGGCTTCGTCCTCAAGCGCCTCCCGGTCCGCCGGATCGCCGAGGCGGTCCGGGTGGTGGCGG
CGGGCGAGGCGGTCCTCTTCCCGGCCGCACTGGGCCGCATGGTCGCCGCCCGCCCGCTGGGCTCCGCCGAGGCCCTGCCG
CAGGCCGACCTGACCGGCCGGGAGGAGGAAGTGCTGCGCCTGATGGCCACCGGCCTCTCCAATCCGGAGATCGCGGGGTC
CCTCACGGTGAGCCTGGAGACGGTCAAGACCCACGTCGGGAACGTACTGACCAAGCTCGGCGCTCAGAATCGCACCCATG
CGGTGGTGATCGCGTACGAATCCGGCCTGATGGTCCCGGGCTTCACCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(18-129)

Bacterial regulatory proteins, luxR family (GerE)

(164-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.981

92.174

0.387
  degU Bacillus subtilis subsp. subtilis str. 168

38.767

98.696

0.383