Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHS71_RS19530 Genome accession   NZ_CP107958
Coordinates   4361937..4362536 (-) Length   199 a.a.
NCBI ID   WP_189927037.1    Uniprot ID   A0ABQ3S2Q5
Organism   Streptomyces sp. NBC_00377     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4356937..4367536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS71_RS19500 (OHS71_19480) - 4357287..4358012 (+) 726 WP_328480654.1 response regulator transcription factor -
  OHS71_RS19505 (OHS71_19485) - 4358009..4359373 (+) 1365 WP_328480655.1 HAMP domain-containing sensor histidine kinase -
  OHS71_RS19510 (OHS71_19490) - 4359374..4359880 (-) 507 WP_328480656.1 SgcJ/EcaC family oxidoreductase -
  OHS71_RS19515 (OHS71_19495) - 4360006..4360197 (-) 192 WP_328480657.1 hypothetical protein -
  OHS71_RS19520 (OHS71_19500) - 4360346..4361182 (+) 837 WP_328480658.1 PhzF family phenazine biosynthesis isomerase -
  OHS71_RS19525 (OHS71_19505) - 4361282..4361944 (-) 663 WP_328480659.1 DUF5063 domain-containing protein -
  OHS71_RS19530 (OHS71_19510) recR 4361937..4362536 (-) 600 WP_189927037.1 recombination mediator RecR Machinery gene
  OHS71_RS19535 (OHS71_19515) - 4362615..4362959 (-) 345 WP_328480660.1 YbaB/EbfC family nucleoid-associated protein -
  OHS71_RS19540 (OHS71_19520) - 4363275..4364027 (+) 753 WP_328480661.1 SLATT domain-containing protein -
  OHS71_RS19545 (OHS71_19525) - 4364166..4366079 (-) 1914 WP_328480662.1 protein kinase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21719.10 Da        Isoelectric Point: 4.9909

>NTDB_id=650171 OHS71_RS19530 WP_189927037.1 4361937..4362536(-) (recR) [Streptomyces sp. NBC_00377]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNVAQEELCGICRDPRRDPAV
ICVVEEPKDVVAVERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=650171 OHS71_RS19530 WP_189927037.1 4361937..4362536(-) (recR) [Streptomyces sp. NBC_00377]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGGCGACTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCGGAACCGACGGACGTGCGCCGGCTCGCGCAGGCCCTCATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAACGTGGCGCAGGAGGAGCTGTGCGGCATCTGCCGCGACCCGCGCCGCGATCCGGCGGTG
ATCTGTGTCGTCGAGGAGCCGAAGGACGTCGTCGCGGTCGAACGCACACGCGAGTTCCGCGGCAGGTACCACGTCCTGGG
GGGCGCGATCAGTCCCATCGAGGGTGTCGGCCCCGACGACCTGCGGATCCGGGAACTGCTCGCGCGGCTGGCCGACGGCA
CGGTCACGGAGCTGATCCTCGCCACGGACCCGAACCTGGAGGGCGAGGCGACGGCCACGTACCTCGCCCGCATGATCAAA
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457