Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   L2Z22_RS15330 Genome accession   NZ_CP091353
Coordinates   3159017..3159490 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain AB189-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3154017..3164490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z22_RS15315 (L2Z22_15310) pilX 3156646..3157464 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z22_RS15320 (L2Z22_15315) pilW 3157461..3158462 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  L2Z22_RS15325 (L2Z22_15320) pilV 3158463..3159023 (-) 561 WP_086221688.1 type IV pilus modification protein PilV Machinery gene
  L2Z22_RS15330 (L2Z22_15325) fimU 3159017..3159490 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  L2Z22_RS15335 (L2Z22_15330) ispH 3159660..3160610 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z22_RS15340 (L2Z22_15335) gmk 3160733..3161362 (+) 630 WP_000015937.1 guanylate kinase -
  L2Z22_RS15345 (L2Z22_15340) rpoZ 3161435..3161713 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z22_RS15350 (L2Z22_15345) - 3161752..3161882 (+) 131 Protein_3004 hypothetical protein -
  L2Z22_RS15355 (L2Z22_15350) - 3161922..3164027 (+) 2106 WP_001117590.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=650129 L2Z22_RS15330 WP_001214065.1 3159017..3159490(-) (fimU) [Acinetobacter baumannii strain AB189-VUB]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=650129 L2Z22_RS15330 WP_001214065.1 3159017..3159490(-) (fimU) [Acinetobacter baumannii strain AB189-VUB]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1