Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG959_RS34285 Genome accession   NZ_CP107951
Coordinates   7689741..7690391 (-) Length   216 a.a.
NCBI ID   WP_326664743.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00385     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7684741..7695391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG959_RS34265 (OG959_34290) - 7685312..7686160 (+) 849 Protein_6758 DMT family transporter -
  OG959_RS34270 (OG959_34295) - 7686218..7687048 (-) 831 WP_326664738.1 alpha/beta fold hydrolase -
  OG959_RS34275 (OG959_34300) - 7687670..7688437 (+) 768 WP_326664739.1 GntR family transcriptional regulator -
  OG959_RS34280 (OG959_34305) - 7688484..7689641 (-) 1158 WP_326664741.1 ROK family transcriptional regulator -
  OG959_RS34285 (OG959_34310) vraR 7689741..7690391 (-) 651 WP_326664743.1 response regulator transcription factor Regulator
  OG959_RS34290 (OG959_34315) - 7690396..7691592 (-) 1197 WP_326664745.1 histidine kinase -
  OG959_RS34295 (OG959_34320) - 7691699..7692643 (+) 945 WP_326664747.1 ATP-binding cassette domain-containing protein -
  OG959_RS34300 (OG959_34325) - 7692646..7693383 (+) 738 WP_326664748.1 ABC transporter permease -
  OG959_RS34305 (OG959_34330) - 7693537..7693974 (+) 438 WP_326664750.1 hypothetical protein -
  OG959_RS34310 (OG959_34335) mug 7694048..7694611 (-) 564 WP_326664752.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23113.92 Da        Isoelectric Point: 5.1490

>NTDB_id=650123 OG959_RS34285 WP_326664743.1 7689741..7690391(-) (vraR) [Streptomyces sp. NBC_00385]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAGDGAAVIPLVRQLRPDVVAMDVRMPLMDGIEATRVVLRTVPDPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPAAVRQLAAAYGTSKAREVMERACLTEREAAV
LRLMARGLSNAEIAARLVVGVETVKSHVSAVLAKLGARDRTQAVIAAYESGFVAPS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=650123 OG959_RS34285 WP_326664743.1 7689741..7690391(-) (vraR) [Streptomyces sp. NBC_00385]
ATGCCGGTTACCGTTCTTCTCGTCGACGACGAACCCCTGGTCCGCGCGGGACTGCGCGCGGTTCTGGAAGCCCAGCCCGA
CATCGAGGTGGTCGGTGAGGCGGGTGACGGCGCCGCGGTGATCCCGTTGGTGCGTCAGCTGCGGCCCGACGTGGTGGCGA
TGGACGTCCGGATGCCGCTCATGGACGGCATCGAAGCGACTCGGGTGGTGCTGCGGACCGTGCCCGATCCTCCGAAGATC
CTGGTGGTGACGACGTTCGAGAACGACGAGTACGTCTACGAGGCGTTGCGGGCCGGCGCGGACGGATTCCTCCTCAAGCG
GGCCCGGCCGGCCGAGATCGTGCACGCGGTGCGGCTGGTGGCGGAGGGCGAGTCCCTGCTGTTCCCTGCCGCGGTGCGGC
AGCTTGCAGCCGCATACGGTACGAGCAAGGCACGGGAGGTCATGGAGCGGGCATGCCTCACCGAGCGCGAGGCGGCAGTG
CTGCGCCTGATGGCCCGCGGGCTGTCCAATGCCGAGATCGCGGCCCGGCTCGTGGTGGGCGTCGAGACGGTGAAGTCCCA
TGTCAGCGCCGTGCTGGCGAAGTTGGGTGCCCGGGACCGCACCCAGGCGGTCATCGCTGCCTACGAGTCCGGATTCGTCG
CTCCGAGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-206)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.784

98.611

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

36.607

100

0.38