Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG959_RS30950 Genome accession   NZ_CP107951
Coordinates   6940396..6941040 (+) Length   214 a.a.
NCBI ID   WP_219572716.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00385     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6935396..6946040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG959_RS30935 (OG959_30955) - 6935414..6937963 (+) 2550 WP_326663787.1 FHA domain-containing protein -
  OG959_RS30940 (OG959_30960) - 6938044..6938799 (-) 756 WP_326663789.1 transglycosylase SLT domain-containing protein -
  OG959_RS30945 (OG959_30965) - 6939258..6940403 (+) 1146 WP_326663791.1 GAF domain-containing sensor histidine kinase -
  OG959_RS30950 (OG959_30970) vraR 6940396..6941040 (+) 645 WP_219572716.1 response regulator transcription factor Regulator
  OG959_RS30955 (OG959_30975) - 6941204..6941455 (+) 252 WP_219572718.1 chaplin family protein -
  OG959_RS30960 (OG959_30980) - 6941535..6942314 (-) 780 WP_326663795.1 hypothetical protein -
  OG959_RS30965 (OG959_30985) - 6942513..6943310 (+) 798 WP_148016018.1 ABC transporter ATP-binding protein -
  OG959_RS30970 (OG959_30990) - 6943390..6943818 (+) 429 WP_326663797.1 NfeD family protein -
  OG959_RS30975 (OG959_30995) - 6943972..6944904 (+) 933 WP_219572723.1 SPFH domain-containing protein -
  OG959_RS30980 (OG959_31000) - 6944967..6945734 (+) 768 WP_326663799.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23135.40 Da        Isoelectric Point: 5.1629

>NTDB_id=650117 OG959_RS30950 WP_219572716.1 6940396..6941040(+) (vraR) [Streptomyces sp. NBC_00385]
MADRLIRVLLVDDHQVVRRGLRTFLEIQDDIEVVGEAADGAEGVARTEELRPDVVLMDIKMPGTDGIEALRRLRELENPA
KVLIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVYAGHVLLQPEVAGALLAQDDPGSGTGRGSTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGAAG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=650117 OG959_RS30950 WP_219572716.1 6940396..6941040(+) (vraR) [Streptomyces sp. NBC_00385]
GTGGCTGACAGGCTCATCAGGGTGCTGCTGGTCGACGACCACCAGGTGGTCCGCCGCGGTCTGCGCACGTTCCTGGAGAT
CCAGGACGACATAGAGGTCGTCGGCGAGGCGGCCGACGGAGCCGAAGGGGTGGCCAGGACGGAGGAGCTGCGGCCCGACG
TGGTGCTGATGGACATCAAGATGCCGGGCACCGACGGCATCGAGGCCCTGCGCAGGCTCCGCGAGCTGGAGAACCCGGCC
AAGGTCCTGATCGTCACCAGCTTCACCGAACAGCGCACCGTCGTGCCCGCCCTGCGCGCCGGTGCCTCCGGCTACGTGTA
CAAGGACGTCGACCCGGACGCACTGGCCGGCGCCATCCGCTCGGTGTACGCGGGCCACGTCCTGCTCCAGCCCGAAGTTG
CCGGTGCGCTGCTGGCCCAGGACGACCCGGGCAGTGGCACGGGCCGGGGGAGCACCCTCACCGAGCGGGAGCGGGAGGTT
CTGGGGCTGATCGCCGACGGCCGGTCGAACCGGGAGATCGCGCGGGCCCTGGTGCTCTCGGAGAAGACCGTCAAGACGCA
CGTCTCGAACATCCTCATGAAGCTGGACCTCTCCGACCGCACCCAGGCGGCACTCTGGGCCGTCCGGCACGGGGCTGCGG
GCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.146

96.262

0.435
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.407