Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG959_RS20315 Genome accession   NZ_CP107951
Coordinates   4551107..4551706 (+) Length   199 a.a.
NCBI ID   WP_148019920.1    Uniprot ID   A0ABY9IWC2
Organism   Streptomyces sp. NBC_00385     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4546107..4556706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG959_RS20290 (OG959_20305) - 4546414..4547775 (+) 1362 WP_326660401.1 aspartate aminotransferase family protein -
  OG959_RS20295 (OG959_20310) - 4547842..4548606 (+) 765 WP_326660403.1 GntR family transcriptional regulator -
  OG959_RS20300 (OG959_20315) - 4548760..4549410 (+) 651 WP_326660405.1 hypothetical protein -
  OG959_RS20305 (OG959_20320) - 4549455..4550249 (-) 795 WP_326660407.1 SLATT domain-containing protein -
  OG959_RS20310 (OG959_20325) - 4550629..4550964 (+) 336 WP_148022075.1 YbaB/EbfC family nucleoid-associated protein -
  OG959_RS20315 (OG959_20330) recR 4551107..4551706 (+) 600 WP_148019920.1 recombination mediator RecR Machinery gene
  OG959_RS20320 (OG959_20335) - 4551808..4552467 (+) 660 WP_326660410.1 DUF5063 domain-containing protein -
  OG959_RS20325 (OG959_20340) - 4552526..4553077 (+) 552 WP_326660412.1 GNAT family protein -
  OG959_RS20330 (OG959_20345) - 4553135..4553962 (-) 828 WP_326660413.1 alpha/beta hydrolase -
  OG959_RS20335 (OG959_20350) - 4554351..4555622 (+) 1272 WP_326660415.1 aspartate kinase -
  OG959_RS20340 (OG959_20355) - 4555619..4556683 (+) 1065 WP_326660417.1 aspartate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21858.16 Da        Isoelectric Point: 5.1721

>NTDB_id=650095 OG959_RS20315 WP_148019920.1 4551107..4551706(+) (recR) [Streptomyces sp. NBC_00385]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQQEECGICRDARRDRTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=650095 OG959_RS20315 WP_148019920.1 4551107..4551706(+) (recR) [Streptomyces sp. NBC_00385]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAGCCCACGGATGTGCGCCGTCTCGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GCTTCTGTGCCGTCTGCGGCAACGTGGCCCAGCAGGAGGAGTGCGGTATCTGCCGTGACGCGCGCCGCGACCGGACGGTC
ATCTGCGTGGTCGAGGAGCCGAAGGACGTCGTGGCGATCGAGCGGACCCGTGAGTTCCGGGGCCGCTACCACGTTCTGGG
CGGGGCGATCAGCCCCATCGAGGGCGTCGGTCCGGACGATCTGCGCATCCGCGAGCTGCTGGCCCGGCTCGCCGACGGCT
CCATCACCGAACTGATCCTGGCGACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGGTCAAG
CCGATGGGTCTGCGCGTCACCCGGCTGGCCAGCGGCCTGCCGGTGGGCGGCGACCTGGAGTACGCGGACGAGGTCACTCT
CGGCCGCGCCTTCGAGGGGAGGCGCCTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452