Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG959_RS16745 Genome accession   NZ_CP107951
Coordinates   3817822..3818460 (+) Length   212 a.a.
NCBI ID   WP_326659259.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00385     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3812822..3823460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG959_RS16725 (OG959_16740) - 3814024..3815103 (-) 1080 WP_326666427.1 beta-propeller fold lactonase family protein -
  OG959_RS16730 (OG959_16745) - 3815127..3815741 (-) 615 WP_326659252.1 ankyrin repeat domain-containing protein -
  OG959_RS16735 (OG959_16750) - 3815798..3816355 (-) 558 WP_326659255.1 heme-binding protein -
  OG959_RS16740 (OG959_16755) - 3816521..3817825 (+) 1305 WP_326659257.1 sensor histidine kinase -
  OG959_RS16745 (OG959_16760) vraR 3817822..3818460 (+) 639 WP_326659259.1 response regulator transcription factor Regulator
  OG959_RS16750 (OG959_16765) - 3818522..3819019 (+) 498 WP_326659261.1 hypothetical protein -
  OG959_RS16755 (OG959_16770) - 3819041..3819751 (-) 711 WP_326659264.1 pentapeptide repeat-containing protein -
  OG959_RS16760 (OG959_16775) - 3819892..3820893 (+) 1002 WP_326659265.1 zinc-binding dehydrogenase -
  OG959_RS16765 (OG959_16780) - 3820906..3821379 (-) 474 WP_326659268.1 GNAT family N-acetyltransferase -
  OG959_RS16770 (OG959_16785) - 3821411..3822313 (-) 903 WP_326659270.1 aminoglycoside phosphotransferase family protein -
  OG959_RS16775 (OG959_16790) - 3822347..3823021 (+) 675 WP_326666430.1 rhomboid-like protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 22392.71 Da        Isoelectric Point: 5.3410

>NTDB_id=650087 OG959_RS16745 WP_326659259.1 3817822..3818460(+) (vraR) [Streptomyces sp. NBC_00385]
MTAAHPPVRILLCDDHAVVRAGLLALLGSEPDIEVVGEAGSGEEAVALTAKLTPDVVLMDLQLGEGIDGVETTRRIVAGT
AGAHVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIRSAAQGRTTLSPPVASRVMARMRAPLPTLTDRERDILG
QLSQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLLP

Nucleotide


Download         Length: 639 bp        

>NTDB_id=650087 OG959_RS16745 WP_326659259.1 3817822..3818460(+) (vraR) [Streptomyces sp. NBC_00385]
ATGACCGCCGCACACCCGCCCGTCCGGATCCTGCTCTGCGACGACCACGCCGTCGTACGCGCCGGACTCCTCGCCCTCCT
CGGCAGCGAGCCCGACATCGAGGTCGTCGGCGAGGCCGGCAGCGGCGAGGAGGCCGTCGCCCTGACCGCCAAGCTCACCC
CCGACGTCGTCCTGATGGACCTCCAGCTGGGCGAGGGCATCGACGGCGTCGAGACGACCCGCCGCATCGTGGCCGGCACC
GCGGGCGCCCACGTCCTCGTCCTGACCACGTACGACACCGACGCCGACATCACCCGCGCCATCGAGGCGGGCGCCACCGG
TTACCTGCTGAAGGCCGAGCGGCCCGAGGAGCTCTTCGCCGCGATCCGCTCCGCCGCCCAGGGCCGCACCACCCTGTCCC
CGCCCGTCGCCAGCCGCGTCATGGCCCGGATGCGCGCCCCCCTGCCCACCCTCACCGACCGCGAACGCGACATCCTGGGC
CAGCTCTCCCAGGGCCTCGGCAACCGCGACATCGCGCGGGCCCTGTTCATCAGCGAGGCCACCGTCAAAACCCACCTGGG
CCGGATCTACGACAAACTCGGCGTCGACACCCGGGCCGGCGCGGTCTCCGTCGCCAAGGAACAGCGGCTGCTGCCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(150-205)

Response regulator receiver domain (Response_reg)

(10-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.097

97.642

0.392
  degU Bacillus subtilis subsp. subtilis str. 168

35.78

100

0.368