Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG959_RS10700 Genome accession   NZ_CP107951
Coordinates   2493241..2493891 (+) Length   216 a.a.
NCBI ID   WP_326657935.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00385     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2488241..2498891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG959_RS10670 (OG959_10675) - 2488429..2489064 (-) 636 WP_326657929.1 TetR/AcrR family transcriptional regulator -
  OG959_RS10675 (OG959_10680) - 2489146..2489928 (+) 783 WP_326657930.1 ATP-binding cassette domain-containing protein -
  OG959_RS10680 (OG959_10685) - 2489951..2490700 (+) 750 WP_326657931.1 ABC transporter permease -
  OG959_RS10685 (OG959_10690) - 2490714..2491286 (+) 573 WP_326657932.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  OG959_RS10690 (OG959_10695) - 2491321..2491896 (-) 576 WP_326657933.1 hypothetical protein -
  OG959_RS10695 (OG959_10700) - 2492048..2493244 (+) 1197 WP_326657934.1 histidine kinase -
  OG959_RS10700 (OG959_10705) vraR 2493241..2493891 (+) 651 WP_326657935.1 response regulator transcription factor Regulator
  OG959_RS10705 (OG959_10710) - 2494071..2495945 (+) 1875 WP_326657936.1 glycoside hydrolase family 18 chitinase -
  OG959_RS10710 (OG959_10715) - 2496112..2496558 (-) 447 WP_326666319.1 DUF2550 domain-containing protein -
  OG959_RS10715 (OG959_10720) - 2496698..2497072 (-) 375 WP_148020742.1 F0F1 ATP synthase subunit epsilon -
  OG959_RS10720 (OG959_10725) atpD 2497182..2498624 (-) 1443 WP_136328753.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22973.50 Da        Isoelectric Point: 4.8543

>NTDB_id=650075 OG959_RS10700 WP_326657935.1 2493241..2493891(+) (vraR) [Streptomyces sp. NBC_00385]
MTIRVLVAEDQSAVRAGLVLILGSAPDIEVVGEAGDGEEAVRLARELRPDLVLMDIQMPRLDGVSATRQVVAERLADVLV
LTTFDLDAYVFGALRAGASGFLLKDTEARGLLDAVRTVARGEGLIAPSVTRRLIAEFAGTTPHGPSEGPDRAVLDTLTRR
EREVLGCLGEGMSNAEIAVRLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGV

Nucleotide


Download         Length: 651 bp        

>NTDB_id=650075 OG959_RS10700 WP_326657935.1 2493241..2493891(+) (vraR) [Streptomyces sp. NBC_00385]
ATGACCATCAGGGTTCTGGTCGCCGAGGACCAGTCGGCCGTGCGGGCGGGGCTGGTCCTCATCCTGGGCAGCGCGCCGGA
CATCGAGGTCGTCGGAGAGGCCGGTGACGGGGAGGAGGCCGTCCGGCTGGCCCGCGAACTGCGCCCGGATCTGGTGCTGA
TGGACATCCAGATGCCCCGGCTGGACGGGGTGTCCGCGACGAGGCAGGTGGTGGCGGAGCGGCTGGCGGACGTGCTGGTG
CTGACGACGTTCGACCTGGACGCGTACGTGTTCGGGGCGCTGCGGGCCGGGGCTTCGGGCTTTCTGCTGAAGGACACCGA
GGCGCGCGGGCTGCTCGACGCGGTCCGCACGGTGGCGCGCGGCGAGGGTCTCATCGCCCCGTCGGTGACGCGCCGGCTGA
TCGCGGAGTTCGCGGGAACCACGCCGCACGGGCCGTCGGAGGGTCCCGACCGGGCGGTCCTGGACACGCTCACCCGGCGC
GAGCGCGAGGTGCTCGGCTGCCTCGGGGAGGGGATGTCGAACGCGGAGATCGCGGTGCGGCTGTCCATGGCCGAGGCGAC
GGTGAAGACGCACGTCAGCCGGTTGCTGGGGAAGCTGGAGCTGCGCAGCAGGGTCCAGGCGGCGGTGCTGGCACAGGAGT
TGGGCGTCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-115)

Bacterial regulatory proteins, luxR family (GerE)

(155-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.254

98.611

0.417
  degU Bacillus subtilis subsp. subtilis str. 168

40.271

100

0.412