Detailed information NTG0650054

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L2Z25_RS18900
• Genome accession: NZ_CP091350
• Coordinates: 2523820..2524680 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152285.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain AB212-VUB
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2518820..2529680

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L2Z25_RS12210 (L2Z25_12210)	-	2519025..2520115 (+)	1091	WP_085940413.1	IS4-like element ISAba1 family transposase	-
L2Z25_RS12215 (L2Z25_12215)	-	2520158..2521021 (+)	864	Protein_2372	tetratricopeptide repeat protein	-
L2Z25_RS12220 (L2Z25_12220)	-	2521098..2521424 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
L2Z25_RS12225 (L2Z25_12225)	rlmB	2521526..2522275 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
L2Z25_RS12230 (L2Z25_12230)	-	2522311..2523225 (+)	915	WP_000075011.1	DMT family transporter	-
L2Z25_RS12235 (L2Z25_12235)	coaE	2523222..2523818 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
L2Z25_RS18900	pilD	2523820..2524680 (-)	861	WP_001152285.1	A24 family peptidase	Machinery gene
L2Z25_RS12250 (L2Z25_12250)	pilC	2524680..2525906 (-)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
L2Z25_RS12255 (L2Z25_12255)	pilB	2525936..2527648 (-)	1713	WP_001274990.1	type IV-A pilus assembly ATPase PilB	Machinery gene
L2Z25_RS12260 (L2Z25_12260)	tpiA	2527940..2528734 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
L2Z25_RS12265 (L2Z25_12265)	secG	2528747..2529076 (+)	330	WP_000555572.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32153.54 Da
• Isoelectric Point: 7.1042

>NTDB_id=650054 L2Z25_RS18900 WP_001152285.1 2523820..2524680(-) (pilD) [Acinetobacter baumannii strain AB212-VUB]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLILTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
IGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=650054 L2Z25_RS18900 WP_001152285.1 2523820..2524680(-) (pilD) [Acinetobacter baumannii strain AB212-VUB]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCAATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGCCATTGCCAACACCCGATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCATCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
ATTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	52.941	95.105	0.503
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	48.485	92.308	0.448