Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG780_RS34860 Genome accession   NZ_CP107950
Coordinates   7921396..7922058 (-) Length   220 a.a.
NCBI ID   WP_328454908.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00386     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7916396..7927058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG780_RS34840 (OG780_34830) - 7917285..7917938 (-) 654 WP_328454900.1 NAD(P)-binding domain-containing protein -
  OG780_RS34845 (OG780_34835) - 7918049..7918933 (+) 885 WP_328454902.1 RNA polymerase sigma-70 factor -
  OG780_RS34850 (OG780_34840) - 7919204..7919965 (+) 762 WP_328454904.1 GntR family transcriptional regulator -
  OG780_RS34855 (OG780_34845) - 7920140..7921297 (-) 1158 WP_328454906.1 ROK family transcriptional regulator -
  OG780_RS34860 (OG780_34850) vraR 7921396..7922058 (-) 663 WP_328454908.1 response regulator transcription factor Regulator
  OG780_RS34865 (OG780_34855) - 7922073..7923236 (-) 1164 WP_328454910.1 histidine kinase -
  OG780_RS34870 (OG780_34860) - 7923345..7924274 (+) 930 WP_328454912.1 ATP-binding cassette domain-containing protein -
  OG780_RS34875 (OG780_34865) - 7924277..7925002 (+) 726 WP_328454913.1 ABC transporter permease subunit -
  OG780_RS34880 (OG780_34870) - 7925062..7925199 (+) 138 WP_328454915.1 hypothetical protein -
  OG780_RS34885 (OG780_34875) - 7925360..7926175 (-) 816 WP_328454917.1 nucleotidyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23393.98 Da        Isoelectric Point: 4.8604

>NTDB_id=650036 OG780_RS34860 WP_328454908.1 7921396..7922058(-) (vraR) [Streptomyces sp. NBC_00386]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRKSRPDVVAMDVRMPLMDGIETTRAVLRTVADPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAAEYGETGGNPAARAAMERAALTER
EADVLRLMARGMSNAEIAARLVVGTETVKSHVSSVLAKLGARDRTQAVIAAYESGFVAPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=650036 OG780_RS34860 WP_328454908.1 7921396..7922058(-) (vraR) [Streptomyces sp. NBC_00386]
ATGCCGGTCACCGTTCTGCTCGTCGACGACGAACCCCTCGTACGCGCGGGGCTGCGCGCCGTGCTGGAGGCGCAGCCCGA
CATCGAGGTCGTCGGTGAGGCCGCCGACGGCGCCGCCGTGATCCCGCTCGTCCGGAAGTCGCGGCCTGATGTGGTCGCCA
TGGACGTCCGGATGCCCCTGATGGACGGCATCGAGACGACCCGGGCGGTTCTGCGGACGGTCGCCGACCCGCCCAAGATC
CTCGTGGTGACGACGTTCGAGAACGACGAGTACGTCTACGAGGCGCTGCGCGCCGGGGCCGACGGCTTCCTCCTGAAGCG
GGCGCGGCCGGCCGAGATCGTGCACGCGGTGCGGCTGGTGGCCGAGGGCGAGTCCCTGCTGTTCCCCGCCTCCGTACGAC
AGTTGGCGGCCGAGTACGGGGAGACCGGTGGGAATCCTGCGGCGCGGGCGGCCATGGAGCGGGCCGCGCTGACCGAGCGC
GAGGCGGACGTGCTGCGACTGATGGCACGGGGGATGTCCAACGCCGAGATCGCCGCGCGGCTGGTCGTCGGCACGGAGAC
GGTCAAGTCGCACGTCAGCTCCGTACTGGCGAAGCTGGGTGCCCGGGACCGTACTCAGGCGGTCATCGCGGCCTACGAGT
CCGGGTTCGTGGCGCCGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.183

99.545

0.4
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.368