Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG780_RS31825 Genome accession   NZ_CP107950
Coordinates   7252290..7252931 (+) Length   213 a.a.
NCBI ID   WP_328453988.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00386     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7247290..7257931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG780_RS31805 (OG780_31785) - 7248068..7248838 (-) 771 WP_328453982.1 transglycosylase SLT domain-containing protein -
  OG780_RS31810 (OG780_31790) - 7249130..7250254 (-) 1125 WP_328453984.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OG780_RS31815 (OG780_31795) - 7250251..7250946 (-) 696 WP_326788608.1 SDR family NAD(P)-dependent oxidoreductase -
  OG780_RS31820 (OG780_31800) - 7251131..7252297 (+) 1167 WP_328453986.1 GAF domain-containing sensor histidine kinase -
  OG780_RS31825 (OG780_31805) vraR 7252290..7252931 (+) 642 WP_328453988.1 response regulator transcription factor Regulator
  OG780_RS31830 (OG780_31810) - 7253077..7253322 (+) 246 WP_326788611.1 chaplin -
  OG780_RS31835 (OG780_31815) - 7253519..7253758 (+) 240 WP_328453990.1 chaplin -
  OG780_RS31840 (OG780_31820) - 7254126..7254914 (-) 789 WP_328453992.1 hypothetical protein -
  OG780_RS31845 (OG780_31825) - 7255036..7255827 (+) 792 WP_328453994.1 ABC transporter ATP-binding protein -
  OG780_RS31850 (OG780_31830) - 7255924..7256358 (+) 435 WP_328453996.1 NfeD family protein -
  OG780_RS31855 (OG780_31835) - 7256489..7257448 (+) 960 WP_328453998.1 SPFH domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23003.30 Da        Isoelectric Point: 5.1490

>NTDB_id=650030 OG780_RS31825 WP_328453988.1 7252290..7252931(+) (vraR) [Streptomyces sp. NBC_00386]
MADAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEASDGADGVARAEELKPDIVLMDVKMPGMDGIDALRKLRELANPAR
VLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHVVLQSEVASALLSQEEVNSGQGRGVSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGITD

Nucleotide


Download         Length: 642 bp        

>NTDB_id=650030 OG780_RS31825 WP_328453988.1 7252290..7252931(+) (vraR) [Streptomyces sp. NBC_00386]
GTGGCTGACGCAATCAAGGTGCTGCTCGTCGACGACCACCAGGTCGTCCGCCGGGGACTGCGCACCTTCCTGGAAGTCCA
GGACGACATCGAGGTCGTCGGGGAGGCGTCCGACGGAGCCGACGGCGTCGCCCGCGCCGAGGAGTTGAAACCGGACATCG
TGCTCATGGACGTCAAGATGCCGGGGATGGACGGCATCGACGCGCTGCGCAAGCTCCGCGAACTCGCCAACCCCGCGCGC
GTGCTGATCGTCACCAGTTTCACCGAGCAGCGCACGGTGGTGCCGGCCCTGCGCGCGGGCGCCGCCGGGTATGTGTACAA
GGACGTCGACCCGGACGCGCTGGCCGGGGCCATCCGCTCGGTCCACGCGGGACACGTCGTCCTGCAATCCGAGGTCGCGA
GCGCCCTGCTGTCCCAGGAAGAGGTCAACTCGGGTCAGGGGAGAGGTGTTTCGCTCACCGAACGGGAGCGGGAGGTGCTC
GGTCTGATCGCGGACGGCCGCTCCAACCGGGAGATCGCCCGCGCCCTCGTCCTCTCCGAGAAGACGGTGAAGACCCACGT
CTCGAACATCCTGATGAAACTCGACCTCGCCGACCGCACCCAGGCCGCGCTCTGGGCGGTGCGGCACGGAATCACGGACT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.024

99.061

0.446
  degU Bacillus subtilis subsp. subtilis str. 168

38.009

100

0.394