Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG780_RS27905 Genome accession   NZ_CP107950
Coordinates   6368171..6368848 (+) Length   225 a.a.
NCBI ID   WP_328452675.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00386     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6363171..6373848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG780_RS27890 (OG780_27870) - 6363808..6364503 (+) 696 WP_326787922.1 TerB family tellurite resistance protein -
  OG780_RS27895 (OG780_27875) - 6364662..6366743 (+) 2082 WP_328452671.1 MMPL family transporter -
  OG780_RS27900 (OG780_27880) - 6366816..6368174 (+) 1359 WP_328452673.1 histidine kinase -
  OG780_RS27905 (OG780_27885) vraR 6368171..6368848 (+) 678 WP_328452675.1 response regulator transcription factor Regulator
  OG780_RS27910 (OG780_27890) - 6369037..6370254 (+) 1218 WP_328452677.1 sialidase family protein -
  OG780_RS27915 (OG780_27895) - 6370529..6371464 (-) 936 WP_328452679.1 dihydrodipicolinate synthase family protein -
  OG780_RS27920 (OG780_27900) - 6371464..6372564 (-) 1101 WP_328452681.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 23568.13 Da        Isoelectric Point: 5.1238

>NTDB_id=650022 OG780_RS27905 WP_328452675.1 6368171..6368848(+) (vraR) [Streptomyces sp. NBC_00386]
MTIRVVLADDQNLVRAAFAMLVETARDMEVVGQAATGREAVELARTGRADLVVMDIRMPDLDGIEATRLIAADENLAGVR
VLVLTTYDTDEHIVEALRAGASGFLVKDTRPAELLDAIRTVAAGDALLSPGPTARLVARFLRAPSAPALAAGGPEGLSGR
EREVLALVARGLNNTEIAAALGLSPLTAKTHVSRIMGKLGARDRTQLVIVAYESGLVTPGDTGRA

Nucleotide


Download         Length: 678 bp        

>NTDB_id=650022 OG780_RS27905 WP_328452675.1 6368171..6368848(+) (vraR) [Streptomyces sp. NBC_00386]
ATGACCATCCGGGTGGTCCTCGCCGACGACCAGAACCTCGTACGGGCCGCGTTCGCCATGCTCGTGGAGACCGCGCGGGA
CATGGAGGTGGTCGGGCAGGCGGCCACCGGGCGGGAGGCCGTGGAACTGGCCCGCACCGGGCGCGCCGACCTCGTCGTGA
TGGACATCCGCATGCCCGACCTGGACGGCATCGAGGCGACCCGGCTCATCGCGGCCGACGAGAACCTCGCCGGGGTCAGG
GTGCTCGTGCTCACCACGTACGACACCGACGAGCACATCGTGGAGGCGCTGCGCGCGGGCGCCTCCGGCTTCCTGGTCAA
GGACACCCGGCCCGCCGAACTCCTCGACGCGATCCGCACGGTGGCCGCCGGGGACGCGCTGCTCTCGCCGGGCCCCACCG
CCCGCCTGGTCGCCCGCTTCCTGCGCGCCCCCTCCGCTCCCGCGCTCGCGGCGGGCGGTCCCGAGGGGCTCTCCGGGCGT
GAGCGCGAGGTGCTCGCCCTGGTCGCGCGCGGCCTCAACAACACCGAGATCGCGGCGGCGTTGGGGCTCAGCCCGCTCAC
CGCGAAGACCCATGTCAGCCGCATCATGGGCAAGCTCGGCGCCCGTGACCGGACCCAGCTCGTCATCGTGGCGTACGAGT
CGGGCCTGGTGACCCCGGGAGACACGGGCCGCGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-119)

Bacterial regulatory proteins, luxR family (GerE)

(157-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.788

96.444

0.364