Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   L2Z25_RS08735 Genome accession   NZ_CP091350
Coordinates   1792106..1792924 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AB212-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1787106..1797924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z25_RS08720 (L2Z25_08720) pilE 1787323..1787748 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  L2Z25_RS08725 (L2Z25_08725) pilY2 1787745..1788227 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  L2Z25_RS08730 (L2Z25_08730) pilY1 1788240..1792094 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  L2Z25_RS08735 (L2Z25_08735) pilX 1792106..1792924 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z25_RS08740 (L2Z25_08740) pilW 1792921..1793922 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  L2Z25_RS08745 (L2Z25_08745) pilV 1793923..1794483 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  L2Z25_RS08750 (L2Z25_08750) fimU 1794477..1794950 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  L2Z25_RS08755 (L2Z25_08755) ispH 1795120..1796070 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z25_RS08760 (L2Z25_08760) gmk 1796193..1796822 (+) 630 WP_000015937.1 guanylate kinase -
  L2Z25_RS08765 (L2Z25_08765) rpoZ 1796895..1797173 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=650019 L2Z25_RS08735 WP_000149374.1 1792106..1792924(-) (pilX) [Acinetobacter baumannii strain AB212-VUB]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=650019 L2Z25_RS08735 WP_000149374.1 1792106..1792924(-) (pilX) [Acinetobacter baumannii strain AB212-VUB]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993