Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG917_RS27525 Genome accession   NZ_CP107948
Coordinates   6190176..6190820 (-) Length   214 a.a.
NCBI ID   WP_328320628.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00388     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6185176..6195820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG917_RS27505 (OG917_27505) - 6186552..6187238 (+) 687 WP_328322221.1 urease accessory UreF family protein -
  OG917_RS27510 (OG917_27510) ureG 6187342..6188019 (+) 678 WP_328322223.1 urease accessory protein UreG -
  OG917_RS27515 (OG917_27515) - 6188079..6188957 (+) 879 WP_328322225.1 urease accessory protein UreD -
  OG917_RS27520 (OG917_27520) - 6189052..6189896 (+) 845 Protein_5420 alpha/beta hydrolase -
  OG917_RS27525 (OG917_27525) vraR 6190176..6190820 (-) 645 WP_328320628.1 response regulator transcription factor Regulator
  OG917_RS27530 (OG917_27530) - 6190817..6191998 (-) 1182 WP_328322227.1 sensor histidine kinase -
  OG917_RS27535 (OG917_27535) - 6192353..6192925 (+) 573 WP_328320630.1 heme-binding protein -
  OG917_RS27540 (OG917_27540) - 6193054..6193650 (+) 597 WP_328320632.1 ankyrin repeat domain-containing protein -
  OG917_RS27545 (OG917_27545) - 6194360..6195190 (+) 831 WP_328320634.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 22377.89 Da        Isoelectric Point: 6.9816

>NTDB_id=649961 OG917_RS27525 WP_328320628.1 6190176..6190820(-) (vraR) [Streptomyces sp. NBC_00388]
MSTPSPVRIVVCDDHAVVRAGLLALLGSAPGIDVVGEAGTGDEAVALAAKLIPDVVLMDLQLGTGMDGVETTRRITSAAL
PPHGPRVLVLTTYDTDADVTRAIEAGATGYLLKAERPEELFAAIHAAAQGRTALSPPVASRVMARMRSPQPSLTARELDI
LAQLAHGLGNRDIARALFISEATVKTHLGRIYSKLGVETRAGAVVVAKEQRLIP

Nucleotide


Download         Length: 645 bp        

>NTDB_id=649961 OG917_RS27525 WP_328320628.1 6190176..6190820(-) (vraR) [Streptomyces sp. NBC_00388]
GTGAGTACGCCGTCCCCGGTCCGTATCGTCGTCTGCGACGACCACGCCGTCGTCCGCGCGGGGCTGCTCGCCCTGCTCGG
CAGCGCGCCCGGCATCGATGTGGTGGGCGAGGCGGGCACCGGCGACGAGGCCGTGGCGCTCGCCGCCAAGCTGATCCCGG
ACGTCGTCCTCATGGACCTCCAGCTCGGCACGGGCATGGACGGTGTCGAGACCACTCGACGCATCACGTCCGCCGCACTC
CCCCCGCACGGCCCCCGCGTCCTCGTCCTGACCACGTACGACACGGACGCGGACGTCACGCGCGCGATCGAGGCCGGGGC
GACCGGCTATCTGCTGAAGGCCGAGCGCCCCGAGGAGCTGTTCGCCGCGATCCACGCGGCCGCGCAGGGCCGTACGGCGC
TCTCGCCGCCGGTCGCCAGCCGGGTGATGGCACGGATGCGCAGCCCACAGCCCTCGCTCACCGCACGGGAACTGGACATC
CTCGCCCAGCTCGCCCACGGACTCGGCAACCGCGATATCGCCCGGGCCCTGTTCATCAGCGAAGCGACCGTCAAGACCCA
CCTGGGCCGTATCTACAGCAAGCTGGGCGTCGAGACGCGGGCGGGCGCGGTCGTGGTGGCGAAGGAGCAGCGCCTCATCC
CCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(9-124)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.863

98.598

0.383
  degU Bacillus subtilis subsp. subtilis str. 168

36.323

100

0.379