Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG917_RS26020 Genome accession   NZ_CP107948
Coordinates   5812473..5813147 (+) Length   224 a.a.
NCBI ID   WP_328320071.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00388     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5807473..5818147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG917_RS26000 (OG917_26005) - 5807850..5808080 (-) 231 WP_328320063.1 hypothetical protein -
  OG917_RS26005 (OG917_26010) - 5808513..5810633 (+) 2121 WP_328320065.1 DNA topoisomerase IV subunit B -
  OG917_RS26010 (OG917_26015) - 5810810..5811331 (+) 522 WP_328320067.1 DUF1453 domain-containing protein -
  OG917_RS26015 (OG917_26020) - 5811328..5812476 (+) 1149 WP_328320069.1 histidine kinase -
  OG917_RS26020 (OG917_26025) vraR 5812473..5813147 (+) 675 WP_328320071.1 response regulator transcription factor Regulator
  OG917_RS26025 (OG917_26030) - 5813245..5813715 (+) 471 WP_328320073.1 DUF485 domain-containing protein -
  OG917_RS26030 (OG917_26035) - 5813727..5815319 (+) 1593 WP_328322188.1 cation acetate symporter -
  OG917_RS26035 (OG917_26040) - 5815293..5816015 (-) 723 WP_328320075.1 response regulator -
  OG917_RS26040 (OG917_26045) - 5816185..5817000 (+) 816 WP_328320077.1 ABC transporter ATP-binding protein -
  OG917_RS26045 (OG917_26050) - 5816990..5817895 (+) 906 WP_328320079.1 ABC transporter permease -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 23657.21 Da        Isoelectric Point: 4.7910

>NTDB_id=649958 OG917_RS26020 WP_328320071.1 5812473..5813147(+) (vraR) [Streptomyces sp. NBC_00388]
MTARVVVADDQSVVREGIVMLLGLLPGVEVVGAAKDGVEAVALVGEHAPDVVLMDLRMPRCDGVEATRLIREQYPSTQVV
VLTTFSDDDSLFPALRAGARGYLTKDAGGEEIVRAIEDVMAGQAGLSPSVQRLLVERITAPPAPAPQAAVELPDGLTPRE
AEILALIAEGLSNAEISRSLHISPATVKTHINNLFAKTGLRDRAQAVLYAYRHGLALPPGTSLT

Nucleotide


Download         Length: 675 bp        

>NTDB_id=649958 OG917_RS26020 WP_328320071.1 5812473..5813147(+) (vraR) [Streptomyces sp. NBC_00388]
GTGACGGCACGGGTGGTGGTCGCCGATGACCAGTCCGTCGTGCGTGAGGGCATCGTGATGCTGCTGGGGCTCCTGCCCGG
GGTCGAGGTCGTCGGCGCGGCCAAGGACGGTGTGGAGGCTGTCGCTCTCGTCGGCGAACACGCTCCCGACGTGGTCCTGA
TGGACCTGAGGATGCCCCGGTGCGACGGGGTGGAGGCGACCAGGCTGATCCGCGAGCAGTACCCGTCCACGCAGGTCGTG
GTCCTGACGACGTTCTCCGACGACGACTCGCTCTTTCCCGCGCTGCGGGCCGGGGCGCGGGGTTATCTGACCAAGGACGC
GGGCGGGGAGGAGATCGTCCGGGCCATCGAGGACGTCATGGCCGGACAGGCCGGACTGTCGCCGAGCGTGCAGCGGCTGC
TCGTCGAGCGCATCACCGCTCCTCCCGCACCGGCCCCGCAGGCCGCGGTCGAGCTGCCCGACGGCCTGACTCCCCGCGAG
GCCGAGATCCTGGCGCTGATCGCGGAAGGGCTCTCCAACGCGGAGATCTCCCGCTCACTGCACATCTCGCCCGCGACCGT
GAAGACGCACATCAACAATCTCTTCGCCAAGACCGGACTGCGGGACCGGGCCCAGGCCGTGCTGTACGCCTACCGGCACG
GCCTTGCCCTGCCGCCGGGCACTTCTCTCACCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40

95.982

0.384
  degU Bacillus subtilis subsp. subtilis str. 168

38.288

99.107

0.379