Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG917_RS19680 Genome accession   NZ_CP107948
Coordinates   4386049..4387446 (-) Length   465 a.a.
NCBI ID   WP_328318927.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00388     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4381049..4392446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG917_RS19655 (OG917_19675) - 4381367..4381918 (-) 552 WP_328318923.1 SigE family RNA polymerase sigma factor -
  OG917_RS19660 (OG917_19680) - 4382096..4383061 (-) 966 WP_328318924.1 A/G-specific adenine glycosylase -
  OG917_RS19665 (OG917_19685) - 4383078..4383686 (-) 609 WP_328318925.1 phosphatase PAP2 family protein -
  OG917_RS19670 (OG917_19690) - 4383869..4384708 (+) 840 WP_328322023.1 hypothetical protein -
  OG917_RS19675 (OG917_19695) disA 4384841..4385992 (-) 1152 WP_328318926.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG917_RS19680 (OG917_19700) radA/sms 4386049..4387446 (-) 1398 WP_328318927.1 DNA repair protein RadA Machinery gene
  OG917_RS19685 (OG917_19705) - 4387699..4389399 (+) 1701 WP_328318928.1 hypothetical protein -
  OG917_RS19690 (OG917_19710) - 4389554..4390354 (-) 801 WP_328318929.1 hypothetical protein -
  OG917_RS19695 (OG917_19715) - 4390432..4391364 (+) 933 WP_328318930.1 Ppx/GppA phosphatase family protein -
  OG917_RS19700 (OG917_19720) - 4391388..4392206 (+) 819 WP_328318931.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 48843.85 Da        Isoelectric Point: 7.4623

>NTDB_id=649941 OG917_RS19680 WP_328318927.1 4386049..4387446(-) (radA/sms) [Streptomyces sp. NBC_00388]
MATRAKTRDRPSYRCTECGYTTAKWLGRCPECQTWGTVEEQGGGPAVRTTAAGPVSSAAIPIGQVDSRTATARSTGVAEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAADSDHRTLYVTAEESASQVRLRADRIHAINDHLYLAAETDLAAVL
GHLDAVKPSLLVLDSVQTVASSELDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLTDPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYTATVGGVKLTEPAADLAVALALASAAGDIPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVIEVADMGDALRALPRRPRARAPQDE

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=649941 OG917_RS19680 WP_328318927.1 4386049..4387446(-) (radA/sms) [Streptomyces sp. NBC_00388]
ATGGCCACCCGCGCGAAGACCAGAGACCGGCCGTCCTACCGCTGCACCGAATGCGGGTACACGACGGCCAAGTGGCTGGG
CCGCTGCCCCGAGTGCCAGACCTGGGGGACGGTCGAGGAGCAGGGCGGCGGGCCCGCCGTACGGACGACCGCGGCCGGCC
CGGTCAGCAGCGCCGCCATTCCCATCGGCCAGGTCGACAGCCGGACGGCGACGGCGCGTTCGACCGGGGTAGCCGAGCTC
GACCGGGTGCTCGGCGGCGGTCTGGTGCCCGGCGCCGTGGTCCTGCTCGCCGGGGAGCCGGGCGTCGGCAAGTCCACGCT
GCTGCTCGATGTCGCGGCGAAGGCCGCCGACTCCGACCACCGCACGCTGTATGTGACGGCCGAGGAGTCCGCGAGCCAGG
TCAGGCTGCGCGCCGACCGGATCCACGCGATCAACGACCACCTCTATCTGGCGGCGGAGACGGATCTCGCCGCGGTGCTC
GGCCACCTCGACGCGGTGAAGCCGTCGCTGCTGGTCCTGGACTCGGTACAGACCGTGGCCTCGTCCGAACTCGACGGCGC
GCCGGGCGGCATGGCCCAGGTGCGCGAGGTGGCCGGCGCGCTGATCCGCGCGTCCAAGGAGCGCGGGATGTCCACGCTGC
TGGTCGGACACGTCACGAAGGACGGCGCCATCGCGGGGCCCCGGCTCCTCGAACACCTGGTGGACGTCGTGCTGTCCTTC
GAGGGCGACCGGCATGCCAGGCTGCGGCTGGTCCGCGGCGTCAAGAACCGTTACGGGGCGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCACCGACCCGAGCGGGCTGTTCCTGACGCGCCGTGACGAACCGGTGCCGG
GGACCTGCCTGACCGTCACCCTGGAGGGCAAGCGCCCGCTGGTGGCGGAGGTCCAGGCGCTCACGGTCGACTCGCAGATC
CCCTCGCCCCGGCGCACCACATCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGGCAG
GATCAGCTCGCTGGGCAAGCGCGACATCTACACGGCGACGGTCGGCGGTGTGAAGCTCACCGAGCCGGCCGCCGACCTGG
CCGTGGCGCTGGCACTGGCCTCCGCGGCCGGCGACATCCCGCTCCCGAAGAACCTGGTCGCGATCGGGGAAGTGGGGCTG
GCCGGCGAGGTCAGAAGGGTCACCGGCGTCCAGCGCAGACTCGCCGAGGCCCACCGTCTCGGCTTCACCCACGCCCTCGT
GCCGACCGATCCGGGGAAGGTCCCCGCCGGCATGAAGGTCATCGAAGTGGCGGACATGGGGGACGCGCTGCGAGCCCTCC
CGCGCCGTCCAAGGGCCCGCGCGCCTCAGGACGAGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-40)

AAA domain (AAA_25)

(81-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.077

97.849

0.422
  radA Streptococcus mitis SK321

41.41

97.634

0.404
  radA Streptococcus mitis NCTC 12261

41.41

97.634

0.404
  radA Streptococcus pneumoniae TIGR4

41.463

96.989

0.402
  radA Streptococcus pneumoniae R6

41.463

96.989

0.402
  radA Streptococcus pneumoniae Rx1

41.463

96.989

0.402
  radA Streptococcus pneumoniae D39

41.463

96.989

0.402