Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG917_RS18755 Genome accession   NZ_CP107948
Coordinates   4167629..4168228 (+) Length   199 a.a.
NCBI ID   WP_327296233.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00388     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4162629..4173228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG917_RS18735 (OG917_18755) sbnB 4163354..4164355 (-) 1002 WP_328318757.1 2,3-diaminopropionate biosynthesis protein SbnB -
  OG917_RS18740 (OG917_18760) sbnA 4164368..4165342 (-) 975 WP_328318758.1 2,3-diaminopropionate biosynthesis protein SbnA -
  OG917_RS18745 (OG917_18765) - 4165972..4166844 (-) 873 WP_328318759.1 SLATT domain-containing protein -
  OG917_RS18750 (OG917_18770) - 4167179..4167514 (+) 336 WP_328318760.1 YbaB/EbfC family nucleoid-associated protein -
  OG917_RS18755 (OG917_18775) recR 4167629..4168228 (+) 600 WP_327296233.1 recombination mediator RecR Machinery gene
  OG917_RS18760 (OG917_18780) - 4168221..4168877 (+) 657 WP_328318761.1 DUF5063 domain-containing protein -
  OG917_RS18765 (OG917_18785) - 4169031..4169597 (-) 567 WP_328318762.1 peroxiredoxin-like family protein -
  OG917_RS18770 (OG917_18790) sigJ 4169594..4170865 (-) 1272 WP_328318763.1 RNA polymerase sigma factor SigJ -
  OG917_RS18775 (OG917_18795) - 4171212..4172324 (+) 1113 WP_328318764.1 DUF1996 domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21745.08 Da        Isoelectric Point: 5.1558

>NTDB_id=649936 OG917_RS18755 WP_327296233.1 4167629..4168228(+) (recR) [Streptomyces sp. NBC_00388]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHSLLEVKDKVRFCAVCGNVAQAELCGICRDTRRDQTV
ICVVEEPKDVVAVERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=649936 OG917_RS18755 WP_327296233.1 4167629..4168228(+) (recR) [Streptomyces sp. NBC_00388]
TTGTACGAAGGCGTGGTCCAGGACCTTATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCGGAGCCCACGGACGTCCGGCGCCTCGCGCACTCGTTGCTCGAAGTGAAGGACAAGGTCC
GGTTCTGCGCGGTGTGCGGGAATGTCGCGCAGGCGGAGCTCTGCGGGATCTGCCGGGACACCCGGCGCGACCAGACGGTC
ATCTGTGTCGTCGAGGAGCCGAAGGACGTCGTGGCGGTCGAGCGGACCCGGGAATTCCGGGGCCGTTACCACGTGCTCGG
CGGCGCCATCAGCCCCATCGAGGGCGTCGGCCCCGACGACTTGCGGATCCGGGAACTGCTGGCCCGGCTCGCGGACGGCG
CCGTCACCGAGCTGATCCTGGCGACCGACCCCAACCTGGAGGGTGAGGCTACGGCGACGTACCTCGCTCGCATGATCAAA
CCCATGGGTTTGAAGGTCACACGGCTGGCGAGTGGTCTCCCTGTGGGGGGAGACCTGGAATACGCGGACGAGGTCACGCT
CGGTCGTGCCTTTGAGGGGAGACGACTACTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467