Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG917_RS07510 Genome accession   NZ_CP107948
Coordinates   1639088..1639747 (-) Length   219 a.a.
NCBI ID   WP_328316755.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00388     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1634088..1644747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG917_RS07475 (OG917_07480) - 1634175..1634711 (+) 537 WP_328316748.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  OG917_RS07480 (OG917_07485) - 1634853..1635356 (+) 504 WP_328316749.1 HNH endonuclease -
  OG917_RS07485 (OG917_07490) - 1635418..1636362 (-) 945 WP_328316750.1 SPFH domain-containing protein -
  OG917_RS07490 (OG917_07495) - 1636445..1636873 (-) 429 WP_328316751.1 NfeD family protein -
  OG917_RS07495 (OG917_07500) - 1636933..1637730 (-) 798 WP_328316752.1 ABC transporter ATP-binding protein -
  OG917_RS07500 (OG917_07505) - 1637853..1638641 (+) 789 WP_328316753.1 hypothetical protein -
  OG917_RS07505 (OG917_07510) - 1638715..1638954 (-) 240 WP_328316754.1 chaplin -
  OG917_RS07510 (OG917_07515) vraR 1639088..1639747 (-) 660 WP_328316755.1 response regulator transcription factor Regulator
  OG917_RS07515 (OG917_07520) - 1639740..1640885 (-) 1146 WP_328316756.1 GAF domain-containing sensor histidine kinase -
  OG917_RS07520 (OG917_07525) - 1641096..1641794 (+) 699 WP_328316757.1 SDR family oxidoreductase -
  OG917_RS07525 (OG917_07530) - 1641791..1642882 (+) 1092 WP_328316758.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OG917_RS07530 (OG917_07535) - 1643146..1643892 (+) 747 WP_328316759.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23542.98 Da        Isoelectric Point: 5.7279

>NTDB_id=649910 OG917_RS07510 WP_328316755.1 1639088..1639747(-) (vraR) [Streptomyces sp. NBC_00388]
MADTAPRPKAAIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAPDGQQGVAAAEELRPDIVLMDIKMPGMDGIEALRRLR
ELANPARVLVVTSFTEQRTVVPALRAGASGYVYKDVDPEALADAIRSVHAGHVLLQPEVAGALLSQEPGGGQGRGTVLTE
REREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRNGAAG

Nucleotide


Download         Length: 660 bp        

>NTDB_id=649910 OG917_RS07510 WP_328316755.1 1639088..1639747(-) (vraR) [Streptomyces sp. NBC_00388]
GTGGCTGACACCGCACCCAGGCCGAAGGCGGCCATCCGCGTCCTGCTCGTCGACGACCACCAGGTGGTCAGGCGCGGCCT
GCGGACCTTCCTCGAAGTGCAGGACGACATCGAGGTCGTGGGCGAGGCACCGGACGGGCAGCAGGGGGTGGCCGCCGCCG
AGGAGCTGCGCCCCGACATCGTCCTGATGGACATCAAGATGCCGGGCATGGACGGCATCGAGGCCCTGCGCAGGCTCAGG
GAGCTGGCCAATCCGGCGCGCGTCCTGGTGGTCACCAGCTTCACCGAGCAGCGCACGGTGGTACCCGCCCTGCGCGCGGG
CGCCTCGGGCTACGTGTACAAGGACGTCGACCCGGAGGCGCTGGCCGACGCGATCCGCTCGGTCCACGCCGGGCACGTCC
TCCTCCAGCCCGAAGTGGCCGGGGCGCTCCTCTCGCAGGAGCCGGGCGGCGGCCAGGGGAGGGGCACCGTACTCACCGAG
CGGGAACGCGAGGTGCTCGGGCTGATCGCCGACGGACGCTCCAACCGGGAGATCGCCCGGGCGCTGGTCCTCTCCGAGAA
GACCGTCAAGACGCATGTCTCGAACATCCTCATGAAACTGGACCTCGCCGACCGGACCCAGGCGGCGCTCTGGGCGGTAA
GGAACGGGGCGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(14-126)

Bacterial regulatory proteins, luxR family (GerE)

(157-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.66

94.064

0.42
  degU Bacillus subtilis subsp. subtilis str. 168

37.557

100

0.379