Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG917_RS04480 Genome accession   NZ_CP107948
Coordinates   987047..987697 (+) Length   216 a.a.
NCBI ID   WP_328316212.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00388     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 982047..992697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG917_RS04455 (OG917_04455) mug 983044..983601 (+) 558 WP_328316207.1 G/U mismatch-specific DNA glycosylase -
  OG917_RS04460 (OG917_04460) - 983623..984090 (-) 468 WP_328316208.1 hypothetical protein -
  OG917_RS04465 (OG917_04465) - 984131..984874 (-) 744 WP_328316209.1 ABC transporter permease -
  OG917_RS04470 (OG917_04470) - 984878..985810 (-) 933 WP_328316210.1 ATP-binding cassette domain-containing protein -
  OG917_RS04475 (OG917_04475) - 985918..987042 (+) 1125 WP_328316211.1 histidine kinase -
  OG917_RS04480 (OG917_04480) vraR 987047..987697 (+) 651 WP_328316212.1 response regulator transcription factor Regulator
  OG917_RS04485 (OG917_04485) - 987787..988947 (+) 1161 WP_328316213.1 ROK family protein -
  OG917_RS04490 (OG917_04490) - 989069..989836 (-) 768 WP_328316214.1 GntR family transcriptional regulator -
  OG917_RS04495 (OG917_04495) - 990158..991042 (-) 885 WP_328316215.1 RNA polymerase sigma-70 factor -
  OG917_RS04500 (OG917_04500) - 991370..992200 (+) 831 WP_328316216.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22901.62 Da        Isoelectric Point: 5.8510

>NTDB_id=649906 OG917_RS04480 WP_328316212.1 987047..987697(+) (vraR) [Streptomyces sp. NBC_00388]
MPISVLLVDDEPLVRAGLRAILEAQGDIQVVGEASDGAAVVPLVRQLRPDVVAMDVRMPLLDGIEATRAVLRTVQQPPRI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLIAEGESLLFPAAVRALAAEYGTSAARKALDRAALTARETAV
LRLMARGLSNAEIAAQLIVGTETVKSHVSAVLAKLGARDRTQAVIAAYEAGLVVPG

Nucleotide


Download         Length: 651 bp        

>NTDB_id=649906 OG917_RS04480 WP_328316212.1 987047..987697(+) (vraR) [Streptomyces sp. NBC_00388]
GTGCCGATCTCTGTGCTCCTCGTGGACGACGAGCCGCTCGTACGTGCCGGACTGCGCGCCATTCTTGAGGCCCAGGGCGA
CATCCAGGTGGTCGGCGAGGCCTCCGACGGTGCGGCCGTAGTACCGCTGGTGCGGCAGCTGCGCCCCGATGTCGTCGCCA
TGGATGTGCGGATGCCGCTGCTGGACGGCATCGAGGCAACCCGGGCAGTACTGCGGACCGTGCAGCAGCCTCCGAGGATC
CTCGTGGTGACCACCTTCGAGAACGACGAATACGTCTACGAGGCGCTGCGCGCCGGTGCGGACGGATTCCTGCTCAAGCG
GGCACGCCCGGCCGAGATCGTGCATGCGGTGCGGCTCATCGCCGAGGGGGAGTCGCTGCTGTTTCCGGCAGCGGTCCGTG
CACTCGCCGCGGAGTACGGCACCAGCGCGGCCAGGAAGGCACTGGACCGGGCTGCTCTCACCGCACGTGAGACCGCGGTG
CTCCGGCTGATGGCACGTGGTCTGTCGAACGCGGAGATCGCCGCCCAGCTGATCGTCGGCACCGAGACGGTGAAGTCCCA
CGTCAGCGCCGTGCTCGCGAAGCTGGGCGCCCGGGACCGTACGCAAGCGGTGATCGCCGCGTACGAGGCGGGGCTGGTCG
TGCCCGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-206)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.437

98.611

0.389
  degU Bacillus subtilis subsp. subtilis str. 168

34.956

100

0.366