Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS70_RS29190 Genome accession   NZ_CP107945
Coordinates   6596689..6597333 (+) Length   214 a.a.
NCBI ID   WP_328402225.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00390     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6591689..6602333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS70_RS29170 (OHS70_29215) - 6592547..6593260 (-) 714 WP_328402219.1 transglycosylase SLT domain-containing protein -
  OHS70_RS29175 (OHS70_29220) - 6593589..6594686 (-) 1098 WP_328402221.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OHS70_RS29180 (OHS70_29225) - 6594683..6595378 (-) 696 WP_328405977.1 SDR family oxidoreductase -
  OHS70_RS29185 (OHS70_29230) - 6595551..6596696 (+) 1146 WP_328402223.1 GAF domain-containing sensor histidine kinase -
  OHS70_RS29190 (OHS70_29235) vraR 6596689..6597333 (+) 645 WP_328402225.1 response regulator transcription factor Regulator
  OHS70_RS29195 (OHS70_29240) - 6597483..6597731 (+) 249 WP_328405979.1 chaplin -
  OHS70_RS29200 (OHS70_29245) - 6598412..6599197 (-) 786 WP_328402227.1 hypothetical protein -
  OHS70_RS29205 (OHS70_29250) - 6599333..6600124 (+) 792 WP_328402229.1 ABC transporter ATP-binding protein -
  OHS70_RS29210 (OHS70_29255) - 6600199..6600627 (+) 429 WP_328402231.1 NfeD family protein -
  OHS70_RS29215 (OHS70_29260) - 6600764..6601708 (+) 945 WP_328402233.1 SPFH domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23046.40 Da        Isoelectric Point: 5.3797

>NTDB_id=649890 OHS70_RS29190 WP_328402225.1 6596689..6597333(+) (vraR) [Streptomyces sp. NBC_00390]
MADKTIRVLLVDDHQVVRRGLRTFLEIQDDIEVVGEAGDGAEGVARAEELGPDVVLMDVKMPGMDGIEALRKLRELANPA
KVLIVTSFTEKRTVVPALRAGASGYVYKDVDPEALAGAIRSVHAGHVLLQQEIAGALLSDDDPAGSTGRGSTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLVDRTQAALWAVRHGLTS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=649890 OHS70_RS29190 WP_328402225.1 6596689..6597333(+) (vraR) [Streptomyces sp. NBC_00390]
GTGGCTGACAAGACGATCCGTGTGCTGTTGGTCGACGACCATCAGGTGGTCCGCCGCGGGCTGCGCACCTTCCTCGAGAT
CCAGGACGACATCGAGGTCGTCGGCGAGGCGGGGGACGGGGCCGAGGGTGTCGCGCGTGCCGAGGAGCTCGGGCCGGATG
TCGTCCTGATGGACGTGAAGATGCCCGGGATGGACGGTATCGAGGCCCTGCGCAAACTGCGTGAGCTGGCCAACCCGGCC
AAGGTGCTGATCGTCACCAGCTTCACCGAGAAGCGCACCGTCGTTCCGGCGCTGCGCGCCGGCGCATCCGGATACGTGTA
CAAGGACGTCGATCCCGAGGCGCTGGCGGGTGCGATCCGTTCCGTGCATGCCGGGCACGTCCTGCTGCAGCAGGAGATCG
CGGGCGCGCTGCTCTCCGACGACGATCCGGCGGGCAGCACGGGCCGCGGCAGCACGCTGACCGAGCGGGAGAGGGAGGTG
CTCGGACTGATCGCGGACGGCCGGTCCAACCGGGAGATCGCCCGGGCGCTGGTGCTGTCCGAGAAGACGGTCAAGACGCA
CGTCTCGAACATCCTGATGAAGCTCGACCTGGTGGACCGCACGCAGGCGGCGCTGTGGGCGGTCCGCCACGGGCTGACCA
GCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.192

97.196

0.439
  degU Bacillus subtilis subsp. subtilis str. 168

37.557

100

0.388