Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   L2Z29_RS01015 Genome accession   NZ_CP091347
Coordinates   191935..192408 (-) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain AB216-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 186935..197408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z29_RS01000 (L2Z29_01000) pilX 189564..190382 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z29_RS01005 (L2Z29_01005) pilW 190379..191380 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  L2Z29_RS01010 (L2Z29_01010) pilV 191381..191941 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  L2Z29_RS01015 (L2Z29_01015) fimU 191935..192408 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  L2Z29_RS01020 (L2Z29_01020) ispH 192578..193528 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z29_RS01025 (L2Z29_01025) gmk 193651..194280 (+) 630 WP_000015937.1 guanylate kinase -
  L2Z29_RS01030 (L2Z29_01030) rpoZ 194353..194631 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z29_RS01035 (L2Z29_01035) - 194670..194799 (+) 130 Protein_192 hypothetical protein -
  L2Z29_RS01040 (L2Z29_01040) - 194839..196944 (+) 2106 WP_001117590.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=649876 L2Z29_RS01015 WP_001214061.1 191935..192408(-) (fimU) [Acinetobacter baumannii strain AB216-VUB]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=649876 L2Z29_RS01015 WP_001214061.1 191935..192408(-) (fimU) [Acinetobacter baumannii strain AB216-VUB]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987