Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   L2Z29_RS01000 Genome accession   NZ_CP091347
Coordinates   189564..190382 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AB216-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 184564..195382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z29_RS00985 (L2Z29_00985) pilE 184781..185206 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  L2Z29_RS00990 (L2Z29_00990) pilY2 185203..185685 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  L2Z29_RS00995 (L2Z29_00995) pilY1 185698..189552 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  L2Z29_RS01000 (L2Z29_01000) pilX 189564..190382 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z29_RS01005 (L2Z29_01005) pilW 190379..191380 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  L2Z29_RS01010 (L2Z29_01010) pilV 191381..191941 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  L2Z29_RS01015 (L2Z29_01015) fimU 191935..192408 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  L2Z29_RS01020 (L2Z29_01020) ispH 192578..193528 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z29_RS01025 (L2Z29_01025) gmk 193651..194280 (+) 630 WP_000015937.1 guanylate kinase -
  L2Z29_RS01030 (L2Z29_01030) rpoZ 194353..194631 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z29_RS01035 (L2Z29_01035) - 194670..194799 (+) 130 Protein_192 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=649873 L2Z29_RS01000 WP_000149374.1 189564..190382(-) (pilX) [Acinetobacter baumannii strain AB216-VUB]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=649873 L2Z29_RS01000 WP_000149374.1 189564..190382(-) (pilX) [Acinetobacter baumannii strain AB216-VUB]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993