Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   OHS70_RS19150 Genome accession   NZ_CP107945
Coordinates   4381762..4382370 (-) Length   202 a.a.
NCBI ID   WP_328399014.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00390     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4376762..4387370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS70_RS19130 (OHS70_19155) - 4377298..4378974 (+) 1677 WP_328399011.1 hypothetical protein -
  OHS70_RS19135 (OHS70_19160) - 4379171..4380631 (+) 1461 WP_328399012.1 N,N-dimethylformamidase beta subunit family domain-containing protein -
  OHS70_RS19140 (OHS70_19165) - 4380722..4381621 (+) 900 WP_328399013.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  OHS70_RS19150 (OHS70_19175) letA 4381762..4382370 (-) 609 WP_328399014.1 response regulator transcription factor Regulator
  OHS70_RS19155 (OHS70_19180) - 4382367..4383629 (-) 1263 WP_328399015.1 histidine kinase -
  OHS70_RS19160 (OHS70_19185) - 4383647..4384411 (-) 765 WP_328399016.1 ABC transporter permease -
  OHS70_RS19165 (OHS70_19190) - 4384413..4385360 (-) 948 WP_328399017.1 ABC transporter ATP-binding protein -
  OHS70_RS19180 (OHS70_19205) - 4385834..4386169 (-) 336 WP_328399018.1 Lsr2 family protein -
  OHS70_RS19185 (OHS70_19210) purS 4386448..4386693 (+) 246 WP_015035032.1 phosphoribosylformylglycinamidine synthase subunit PurS -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21057.12 Da        Isoelectric Point: 7.0644

>NTDB_id=649866 OHS70_RS19150 WP_328399014.1 4381762..4382370(-) (letA) [Streptomyces sp. NBC_00390]
MTVRVLLADDEHLIRGALAALLALEDDLVVVAEAASGPEALAMARAHRPDVAVLDLQMPGADGVTVATSLRTELPECRTM
IVTSHGLPGHLKRALTAGVRGFVPKTVSAQRLAEIIRTVHAGNRYVDPELAADAISAGDSPLTAREAEVLALAADGAPVA
EIAERASLSQGTVRNYLSSAAGKLGAGNRHTAARLARRRGWV

Nucleotide


Download         Length: 609 bp        

>NTDB_id=649866 OHS70_RS19150 WP_328399014.1 4381762..4382370(-) (letA) [Streptomyces sp. NBC_00390]
GTGACCGTACGCGTACTGCTCGCCGACGACGAGCATCTGATCCGCGGCGCGCTCGCCGCCCTGCTCGCTCTCGAGGACGA
TCTCGTCGTGGTCGCCGAGGCCGCCAGCGGCCCTGAGGCGCTCGCCATGGCACGTGCGCACCGGCCCGATGTCGCGGTGC
TCGATCTGCAGATGCCCGGCGCGGACGGTGTGACGGTGGCCACATCCCTGCGGACCGAACTACCGGAGTGCCGGACCATG
ATCGTGACCAGTCATGGGCTGCCCGGCCATCTGAAAAGGGCGCTCACAGCCGGAGTGCGGGGCTTTGTCCCGAAGACCGT
GAGTGCGCAGCGGCTCGCGGAGATCATCCGTACCGTGCACGCCGGAAACCGTTATGTGGACCCGGAGTTGGCGGCCGACG
CGATCTCGGCCGGCGACTCGCCGCTGACCGCCCGCGAGGCCGAAGTGCTGGCGCTGGCGGCCGACGGAGCGCCCGTCGCG
GAGATCGCCGAGCGCGCCTCGCTCTCCCAGGGAACCGTCCGGAACTACCTCTCCTCGGCGGCCGGAAAACTCGGAGCCGG
GAACCGGCACACGGCGGCACGTCTCGCACGCCGCCGAGGTTGGGTATAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(141-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

36.232

100

0.371
  letA Legionella pneumophila strain ERS1305867

36.232

100

0.371