Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHS70_RS16995 Genome accession   NZ_CP107945
Coordinates   3925898..3926497 (-) Length   199 a.a.
NCBI ID   WP_328398385.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00390     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3920898..3931497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS70_RS16975 (OHS70_16995) - 3921823..3922887 (-) 1065 WP_328398377.1 aspartate-semialdehyde dehydrogenase -
  OHS70_RS16980 (OHS70_17000) - 3922884..3924155 (-) 1272 WP_328398379.1 aspartate kinase -
  OHS70_RS16985 (OHS70_17005) - 3924371..3925114 (-) 744 WP_328398381.1 hypothetical protein -
  OHS70_RS16990 (OHS70_17010) - 3925246..3925905 (-) 660 WP_328398383.1 DUF5063 domain-containing protein -
  OHS70_RS16995 (OHS70_17015) recR 3925898..3926497 (-) 600 WP_328398385.1 recombination mediator RecR Machinery gene
  OHS70_RS17000 (OHS70_17020) - 3926580..3926915 (-) 336 WP_328398387.1 YbaB/EbfC family nucleoid-associated protein -
  OHS70_RS17005 (OHS70_17025) - 3927208..3927954 (+) 747 WP_328398389.1 SLATT domain-containing protein -
  OHS70_RS17010 (OHS70_17030) - 3928347..3929297 (-) 951 WP_328398391.1 class I SAM-dependent methyltransferase -
  OHS70_RS17015 (OHS70_17035) - 3929438..3930088 (-) 651 WP_328398393.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21812.17 Da        Isoelectric Point: 5.1558

>NTDB_id=649859 OHS70_RS16995 WP_328398385.1 3925898..3926497(-) (recR) [Streptomyces sp. NBC_00390]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHVLQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQQEQCTICRDPRRDLSV
ICVVEEPKDVVAIERTREFRGRYHILGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMVK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=649859 OHS70_RS16995 WP_328398385.1 3925898..3926497(-) (recR) [Streptomyces sp. NBC_00390]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCATGTCCTGCAGGCCGAGCCCACCGATGTGCGCCGTCTCGCGCACGCGCTGCTCGAGGTCAAGGACAAAGTGC
GCTTCTGTGCGGTGTGCGGCAATGTCGCCCAGCAGGAGCAGTGCACCATCTGCCGTGACCCGCGCCGCGACCTGTCGGTC
ATCTGTGTCGTGGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACCCGCGAGTTCCGGGGCCGCTACCACATCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCCGATGACCTGCGCATCCGTGAGCTGCTGGCCCGCCTCGCGGACGGTG
CGGTCACGGAGCTGATCCTGGCCACGGACCCGAATCTGGAGGGCGAGGCGACCGCCACGTACCTCGCACGCATGGTGAAG
CCGATGGGACTCAAGGTCACGCGGCTGGCCAGCGGTCTGCCCGTGGGGGGAGACTTGGAATACGCCGACGAGGTCACGCT
CGGGCGTGCCTTCGAGGGGAGACGACTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.633

98.492

0.558
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457