Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHS70_RS16105 Genome accession   NZ_CP107945
Coordinates   3740547..3741989 (+) Length   480 a.a.
NCBI ID   WP_328398039.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00390     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3735547..3746989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS70_RS16085 (OHS70_16105) - 3736192..3737124 (-) 933 WP_328398031.1 Ppx/GppA phosphatase family protein -
  OHS70_RS16090 (OHS70_16110) - 3737165..3737995 (+) 831 WP_328398033.1 hypothetical protein -
  OHS70_RS16095 (OHS70_16115) - 3738023..3739711 (-) 1689 WP_328398035.1 hypothetical protein -
  OHS70_RS16100 (OHS70_16120) - 3739908..3740489 (+) 582 WP_328398037.1 dihydrofolate reductase family protein -
  OHS70_RS16105 (OHS70_16125) radA/sms 3740547..3741989 (+) 1443 WP_328398039.1 DNA repair protein RadA Machinery gene
  OHS70_RS16110 (OHS70_16130) disA 3742035..3743186 (+) 1152 WP_328398041.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHS70_RS16115 (OHS70_16135) - 3743250..3744047 (-) 798 WP_328398043.1 hypothetical protein -
  OHS70_RS16120 (OHS70_16140) - 3744346..3745260 (+) 915 WP_328398045.1 A/G-specific adenine glycosylase -
  OHS70_RS16125 (OHS70_16145) - 3745432..3745998 (+) 567 WP_328398047.1 SigE family RNA polymerase sigma factor -
  OHS70_RS16130 (OHS70_16150) - 3745986..3746663 (+) 678 WP_328398049.1 hypothetical protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 50529.63 Da        Isoelectric Point: 8.2598

>NTDB_id=649854 OHS70_RS16105 WP_328398039.1 3740547..3741989(+) (radA/sms) [Streptomyces sp. NBC_00390]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEYGAPAVRTTAAGRVSTAALPIGQVDGRQATARSTGVDEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEAHRTLYVTGEESASQVRLRADRIKALHDHLYLAAETDLSAVL
GHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPSGMKVTEVADMGDALRVLPRGRQQGSGGAGRRERAEAPREDEARR

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=649854 OHS70_RS16105 WP_328398039.1 3740547..3741989(+) (radA/sms) [Streptomyces sp. NBC_00390]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCGCACCCGCCGTGCGCACCACTGCCGCGGGGC
GCGTCTCCACCGCCGCGCTGCCCATCGGCCAGGTCGACGGCCGCCAGGCGACCGCGCGCTCCACCGGTGTGGACGAGCTC
GACCGCGTGCTCGGCGGCGGACTGGTGCCGGGCGCCGTCGTGCTGCTCGCGGGCGAGCCCGGTGTCGGCAAGTCCACGCT
GCTGCTCGATGTCGCGGCCAAGGCTGCGAGCGAGGCCCACCGCACGCTGTATGTGACGGGCGAGGAGTCAGCGAGCCAGG
TCCGGCTGCGCGCCGACCGGATCAAGGCCCTGCACGACCACCTGTATCTCGCCGCCGAGACCGATCTGTCCGCGGTGCTC
GGCCACTTGGACGCGGTCAAGCCGTCCCTGCTCGTCCTCGACTCCGTGCAGACGGTCGCGTCCCCCGAGATCGACGGCGC
CCCGGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGAGCCCTGATCCGTGCTTCCAAGGAGCGCGGCATGTCCACGCTGC
TGGTCGGTCATGTCACCAAGGACGGTGCGATCGCCGGGCCGCGGCTGCTGGAGCACCTGGTCGATGTGGTGCTCTCCTTC
GAGGGCGACCGGCACGCCCGGCTGCGGCTGGTCCGCGGCGTCAAGAACCGCTACGGGGCGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGGATCACCGGCCTCGCCGACCCGTCCGGGCTCTTCCTCACCCGCCGCGACGAGCCCGTCCCCG
GCACCTGCCTGACGGTCACGCTCGAAGGCCGCCGCCCGCTCGTGGCCGAGGTGCAGGCACTGACCGTGGACTCCCAGATC
CCCTCGCCCCGGCGCACCACCTCCGGCCTGGAGACCTCGCGCGTGTCGATGATGCTCGCCGTGCTCGAGCAGCGCGGGCG
GATCAGCGCGCTCGGCAAGCGAGACATCTACAGCGCGACGGTCGGCGGAGTGAAGCTCTCCGAGCCCGCGGCCGACCTCG
CCATCGCGCTCGCCCTGGCGTCGGCCGCCAGCGACACCCCACTGCCGAAGAACCTCGTCGCGATCGGCGAGGTGGGCCTT
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCCGGCTCGCCGAGGCACACCGGCTCGGCTTCACCCACGCGCTGGT
CCCGTCCGATCCGGGCAAGGTTCCGTCCGGTATGAAGGTCACGGAAGTAGCGGACATGGGGGACGCGCTGCGGGTGCTCC
CGCGGGGGCGGCAGCAGGGCTCGGGCGGGGCCGGACGCAGAGAGCGGGCAGAGGCCCCACGGGAGGACGAGGCGCGCCGG
TAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(82-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.15

94.375

0.417
  radA Streptococcus pneumoniae Rx1

42.478

94.167

0.4
  radA Streptococcus pneumoniae D39

42.478

94.167

0.4
  radA Streptococcus pneumoniae R6

42.478

94.167

0.4
  radA Streptococcus pneumoniae TIGR4

42.478

94.167

0.4
  radA Streptococcus mitis SK321

43.925

89.167

0.392
  radA Streptococcus mitis NCTC 12261

43.925

89.167

0.392