Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG212_RS08680 Genome accession   NZ_CP107944
Coordinates   2065104..2065775 (-) Length   223 a.a.
NCBI ID   WP_326575045.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00391     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2060104..2070775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG212_RS08660 (OG212_08665) - 2060320..2061465 (-) 1146 WP_326575041.1 ROK family glucokinase -
  OG212_RS08665 (OG212_08670) - 2061606..2062343 (-) 738 WP_326585559.1 GntR family transcriptional regulator -
  OG212_RS08670 (OG212_08675) - 2062473..2063483 (+) 1011 WP_326575043.1 Gfo/Idh/MocA family oxidoreductase -
  OG212_RS08675 (OG212_08680) - 2063762..2064952 (-) 1191 WP_328508113.1 cytochrome P450 -
  OG212_RS08680 (OG212_08685) vraR 2065104..2065775 (-) 672 WP_326575045.1 response regulator transcription factor Regulator
  OG212_RS08685 (OG212_08690) - 2065931..2066959 (+) 1029 WP_326575047.1 aldo/keto reductase -
  OG212_RS08690 (OG212_08695) - 2066992..2067828 (-) 837 WP_326575049.1 hypothetical protein -
  OG212_RS08695 (OG212_08700) - 2068218..2069477 (-) 1260 WP_328505740.1 histidine kinase -
  OG212_RS08700 (OG212_08705) - 2069680..2069883 (+) 204 WP_328505741.1 hypothetical protein -
  OG212_RS08705 (OG212_08710) - 2069981..2070367 (-) 387 WP_326575055.1 ribonuclease domain-containing protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23750.12 Da        Isoelectric Point: 4.8459

>NTDB_id=649766 OG212_RS08680 WP_326575045.1 2065104..2065775(-) (vraR) [Streptomyces sp. NBC_00391]
MTVIRLLLVDDDPLVRAGLSFMLGGADDIEIVGEGADGDEVDALVDRTRPDVVLMDIRMPTVDGLSATERLRARADAPQV
VVLTTFHADDQVLRALRVGAAGFVLKDTPPAEIVEAVRRVAAGDPVFSPAVTRRLMAHAAGSAPDTRRATARSRVAALND
REREVAVAVGRGASNAEIAGELFLSVATVKTHVSRILAKLDLNNRVQIALLTYDAGLLEDDGR

Nucleotide


Download         Length: 672 bp        

>NTDB_id=649766 OG212_RS08680 WP_326575045.1 2065104..2065775(-) (vraR) [Streptomyces sp. NBC_00391]
ATGACCGTGATCCGACTGCTCCTCGTCGACGACGACCCCCTCGTGCGCGCCGGACTCTCCTTCATGCTGGGCGGCGCCGA
CGATATCGAGATCGTGGGCGAGGGCGCCGACGGCGACGAGGTGGACGCCCTCGTCGACCGCACGCGGCCCGACGTCGTCC
TCATGGACATCCGGATGCCGACCGTCGACGGTCTCTCGGCCACCGAGCGGCTCCGCGCCCGCGCGGACGCGCCCCAGGTC
GTCGTCCTCACCACCTTCCACGCCGACGACCAGGTGCTGCGTGCCCTGCGCGTGGGCGCCGCCGGTTTCGTCCTGAAGGA
CACCCCGCCCGCCGAGATCGTCGAGGCGGTACGGCGGGTCGCGGCCGGCGACCCCGTGTTCTCGCCGGCCGTCACCCGCC
GTCTGATGGCACACGCCGCCGGCAGCGCACCCGACACCCGGCGCGCCACCGCCCGTTCCCGCGTCGCCGCCCTCAACGAC
CGCGAACGCGAGGTGGCCGTCGCCGTCGGCCGCGGCGCCTCCAACGCCGAGATCGCCGGCGAACTCTTCCTGAGCGTGGC
CACCGTCAAGACCCACGTCTCCCGCATCCTCGCCAAACTCGACCTCAACAACCGTGTGCAGATCGCCCTGTTGACGTACG
ACGCGGGACTGCTGGAGGACGACGGGCGCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(157-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.443

98.206

0.368
  degU Bacillus subtilis subsp. subtilis str. 168

35.683

100

0.363