Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS81_RS28760 Genome accession   NZ_CP107940
Coordinates   6575580..6576272 (+) Length   230 a.a.
NCBI ID   WP_328387956.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00400     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6570580..6581272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS81_RS28740 (OHS81_28765) - 6570980..6571762 (-) 783 WP_328387948.1 transglycosylase SLT domain-containing protein -
  OHS81_RS28745 (OHS81_28770) - 6572173..6573306 (-) 1134 WP_328387950.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OHS81_RS28750 (OHS81_28775) - 6573303..6574229 (-) 927 WP_328387952.1 SDR family NAD(P)-dependent oxidoreductase -
  OHS81_RS28755 (OHS81_28780) - 6574415..6575560 (+) 1146 WP_328387954.1 GAF domain-containing sensor histidine kinase -
  OHS81_RS28760 (OHS81_28785) vraR 6575580..6576272 (+) 693 WP_328387956.1 response regulator transcription factor Regulator
  OHS81_RS28765 (OHS81_28790) - 6576463..6576705 (+) 243 WP_328387958.1 chaplin -
  OHS81_RS28770 (OHS81_28795) - 6576863..6577108 (+) 246 WP_328387960.1 chaplin -
  OHS81_RS28775 (OHS81_28800) - 6577210..6578025 (-) 816 WP_328387962.1 hypothetical protein -
  OHS81_RS28780 (OHS81_28805) - 6578134..6578928 (+) 795 WP_311626890.1 ABC transporter ATP-binding protein -
  OHS81_RS28785 (OHS81_28810) - 6579080..6579493 (+) 414 WP_328391483.1 NfeD family protein -
  OHS81_RS28790 (OHS81_28815) - 6579595..6580533 (+) 939 WP_030087611.1 SPFH domain-containing protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 24344.62 Da        Isoelectric Point: 5.1544

>NTDB_id=649747 OHS81_RS28760 WP_328387956.1 6575580..6576272(+) (vraR) [Streptomyces sp. NBC_00400]
MGNPADGAGAASGRPAGGGQVIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEASDGAEGIAAAEELRPDVVLMDVKMPGM
DGIEALRRLRELDNPARVLVVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQPEVAGALLSQEENN
GGQGRGTSLTDREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGIGA

Nucleotide


Download         Length: 693 bp        

>NTDB_id=649747 OHS81_RS28760 WP_328387956.1 6575580..6576272(+) (vraR) [Streptomyces sp. NBC_00400]
ATGGGGAATCCCGCGGACGGAGCAGGGGCGGCCTCCGGGCGGCCCGCGGGCGGCGGGCAGGTGATCCGCGTACTGCTCGT
CGACGATCACCAGGTGGTGCGCCGTGGGCTGCGGACGTTCCTGGAGGTCCAGGACGACATCGAGGTGGTGGGCGAGGCCT
CCGACGGCGCCGAGGGCATCGCCGCCGCCGAAGAGCTGCGCCCGGACGTGGTCCTGATGGACGTCAAGATGCCCGGCATG
GACGGCATCGAGGCGCTCCGCAGGCTGCGCGAACTGGACAACCCCGCCCGGGTGCTGGTGGTCACCAGCTTCACCGAACA
GCGCACCGTCGTCCCGGCGCTGCGCGCGGGCGCGGCCGGCTACGTCTACAAGGACATCGACCCGGACGCGCTGGCCGGCG
CCATCCGCTCGGTCCACGCGGGCCATGTCCTGCTGCAGCCCGAGGTGGCCGGCGCACTGCTGTCCCAGGAGGAGAACAAC
GGCGGCCAGGGGCGCGGCACTTCCCTCACCGACCGGGAGCGCGAGGTCCTCGGCCTGATCGCGGACGGCCGCTCCAACCG
CGAGATCGCCCGTGCGCTGGTGCTGTCCGAGAAGACCGTCAAGACCCATGTCTCCAACATCCTCATGAAGCTCGACCTCG
CCGACCGGACGCAGGCCGCACTGTGGGCCGTACGGCACGGCATCGGGGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(168-223)

Response regulator receiver domain (Response_reg)

(24-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.972

91.739

0.422
  degU Bacillus subtilis subsp. subtilis str. 168

38.009

96.087

0.365