Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS81_RS18545 Genome accession   NZ_CP107940
Coordinates   4264940..4265602 (-) Length   220 a.a.
NCBI ID   WP_256331777.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00400     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4259940..4270602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS81_RS18535 (OHS81_18540) - 4262664..4262783 (+) 120 WP_206739719.1 class III lanthipeptide -
  OHS81_RS18540 (OHS81_18545) - 4262944..4264887 (+) 1944 WP_328385857.1 FAD/NAD(P)-binding protein -
  OHS81_RS18545 (OHS81_18550) vraR 4264940..4265602 (-) 663 WP_256331777.1 response regulator transcription factor Regulator
  OHS81_RS18550 (OHS81_18555) - 4265783..4266943 (-) 1161 WP_328385858.1 histidine kinase -
  OHS81_RS18555 (OHS81_18560) - 4267307..4268071 (+) 765 WP_328385859.1 hypothetical protein -
  OHS81_RS18560 (OHS81_18565) - 4268380..4269042 (+) 663 WP_328385860.1 transglycosylase family protein -
  OHS81_RS18565 (OHS81_18570) - 4269275..4269643 (+) 369 WP_328385861.1 hypothetical protein -
  OHS81_RS18570 (OHS81_18575) - 4269917..4270315 (-) 399 WP_328391241.1 hypothetical protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 22987.74 Da        Isoelectric Point: 8.0975

>NTDB_id=649727 OHS81_RS18545 WP_256331777.1 4264940..4265602(-) (vraR) [Streptomyces sp. NBC_00400]
MRVLVADDQAAVRSGLVLVLQTDPGITVVGEAGDGAAAVRMAAELRPDVVLMDVQMPQLNGVAATRRIVERGLAEVLVLT
TFDLNEYIFGALRAGAGGFILKNAEPAVLVSAVREVAHGDGFLTPAIARRLITEFAGRPPVAGPTLPAGAAQALDTLTKR
ELEVLACIARGLANSAIAETLHLAEGTVKTHTSRILSKLNLRSRVQAAILAQQHGIALRG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=649727 OHS81_RS18545 WP_256331777.1 4264940..4265602(-) (vraR) [Streptomyces sp. NBC_00400]
ATACGGGTCCTGGTGGCCGATGACCAGGCCGCGGTGCGCTCCGGACTGGTGCTGGTGCTGCAGACCGACCCCGGCATCAC
GGTGGTCGGCGAGGCCGGCGACGGCGCGGCGGCGGTCCGGATGGCCGCCGAACTACGGCCCGATGTGGTCCTGATGGACG
TCCAGATGCCGCAGCTCAACGGGGTCGCCGCCACCCGCAGGATCGTGGAGCGCGGACTCGCCGAGGTGCTGGTGCTGACC
ACCTTCGACCTCAACGAGTACATCTTCGGGGCGCTACGGGCCGGCGCCGGCGGCTTCATCCTCAAGAACGCGGAGCCGGC
CGTACTGGTCAGCGCGGTACGGGAGGTGGCACACGGGGACGGCTTCCTCACCCCCGCCATCGCCCGGCGCCTGATCACCG
AGTTCGCCGGCCGGCCCCCGGTGGCCGGCCCCACCCTCCCGGCGGGCGCCGCACAGGCCCTCGACACCCTCACCAAAAGG
GAGTTGGAGGTACTGGCCTGTATAGCCCGCGGCCTGGCCAACAGCGCCATCGCCGAAACCCTCCACCTCGCGGAGGGCAC
CGTGAAAACACACACCAGCCGGATCCTGTCGAAACTCAACCTGCGCAGCCGGGTACAGGCCGCCATCCTGGCCCAACAGC
ACGGGATCGCGCTGCGGGGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-113)

Bacterial regulatory proteins, luxR family (GerE)

(155-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.156

99.091

0.368
  degU Bacillus subtilis subsp. subtilis str. 168

36.199

100

0.364