Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHS81_RS16275 Genome accession   NZ_CP107940
Coordinates   3776053..3776652 (-) Length   199 a.a.
NCBI ID   WP_018089931.1    Uniprot ID   A0A0P4R2A1
Organism   Streptomyces sp. NBC_00400     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3771053..3781652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS81_RS16255 (OHS81_16260) - 3771432..3772097 (-) 666 WP_311624809.1 SigE family RNA polymerase sigma factor -
  OHS81_RS16260 (OHS81_16265) - 3772604..3773719 (-) 1116 WP_328385480.1 aspartate-semialdehyde dehydrogenase -
  OHS81_RS16265 (OHS81_16270) - 3773716..3774987 (-) 1272 WP_088799022.1 aspartate kinase -
  OHS81_RS16270 (OHS81_16275) - 3775398..3776060 (-) 663 WP_328385481.1 DUF5063 domain-containing protein -
  OHS81_RS16275 (OHS81_16280) recR 3776053..3776652 (-) 600 WP_018089931.1 recombination mediator RecR Machinery gene
  OHS81_RS16280 (OHS81_16285) - 3776704..3777054 (-) 351 WP_093484352.1 YbaB/EbfC family nucleoid-associated protein -
  OHS81_RS16285 (OHS81_16290) - 3777361..3780000 (-) 2640 WP_328385482.1 DNA polymerase III subunit gamma and tau -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21790.14 Da        Isoelectric Point: 4.9909

>NTDB_id=649725 OHS81_RS16275 WP_018089931.1 3776053..3776652(-) (recR) [Streptomyces sp. NBC_00400]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLANALMEVKAKVRFCGTCGNVAQEEQCRVCLDPRRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=649725 OHS81_RS16275 WP_018089931.1 3776053..3776652(-) (recR) [Streptomyces sp. NBC_00400]
GTGTACGAAGGCGTGGTCCAGGACCTGATCGATGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATTCTTCAGGCCGAGCCCACCGATGTCCGCCGGCTCGCGAACGCGCTGATGGAGGTCAAGGCGAAGGTCC
GGTTCTGCGGCACCTGCGGCAATGTGGCGCAGGAGGAGCAGTGCCGGGTCTGCCTGGACCCGAGGCGTGATCCGGCGGTC
ATCTGCGTCGTGGAGGAGCCCAAGGACGTCGTGGCGATCGAGCGGACGCGTGAGTTCCGCGGTCGCTACCACGTCCTCGG
CGGGGCGATCAGCCCGATCGAGGGCGTGGGACCCGACGACCTGCGGATCAGGGAACTGCTGGCCAGGCTCGCGGACGGCA
CCGTCACCGAGCTGATTCTGGCCACCGACCCGAATCTCGAGGGCGAGGCCACGGCCACGTATCTGGCCCGCATGATCAAA
CCCATGGGCCTGAGAGTGACGCGGCTGGCGAGCGGTCTGCCGGTCGGTGGCGATCTGGAGTACGCGGACGAGGTCACGCT
GGGGCGGGCCTTCGAAGGGAGGAGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P4R2A1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.082

98.492

0.533
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

45.876

97.487

0.447