Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS81_RS15545 Genome accession   NZ_CP107940
Coordinates   3542065..3542748 (-) Length   227 a.a.
NCBI ID   WP_328385361.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00400     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3537065..3547748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS81_RS15530 (OHS81_15535) - 3538020..3538982 (-) 963 WP_328385359.1 DUF2520 domain-containing protein -
  OHS81_RS15535 (OHS81_15540) - 3539482..3540582 (+) 1101 WP_328391187.1 beta-eliminating lyase-related protein -
  OHS81_RS15540 (OHS81_15545) - 3540897..3542006 (+) 1110 WP_328385360.1 DUF5937 family protein -
  OHS81_RS15545 (OHS81_15550) vraR 3542065..3542748 (-) 684 WP_328385361.1 response regulator transcription factor Regulator
  OHS81_RS15550 (OHS81_15555) - 3542870..3544072 (-) 1203 WP_328385362.1 histidine kinase -
  OHS81_RS15555 (OHS81_15560) - 3544246..3545292 (+) 1047 WP_328385363.1 SAM-dependent methyltransferase -
  OHS81_RS15560 (OHS81_15565) - 3545337..3546479 (+) 1143 WP_328385364.1 NADH-quinone oxidoreductase subunit D -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24315.30 Da        Isoelectric Point: 5.3933

>NTDB_id=649723 OHS81_RS15545 WP_328385361.1 3542065..3542748(-) (vraR) [Streptomyces sp. NBC_00400]
MTIRVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGNGVEALEVLRATHVDVILMDVRMPHLDGVEATRRICEGGQKADAP
KVLILTTFDLDEYAFSALKAGASGFMLKDVPPGDLLAAIRAVQSGDAVVAPSTTRRLLDRFTPMLPATSAEPARPELERL
TEREREVLLLVAQGLSNGEIAARLVLSEATVKTHVGRILAKLGLRDRVQAVVLAYETGLVRAGGAGA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=649723 OHS81_RS15545 WP_328385361.1 3542065..3542748(-) (vraR) [Streptomyces sp. NBC_00400]
ATGACCATCCGTGTGATGCTCGTCGACGACCAGGTGCTGCTGCGCACCGGTTTCCGGATGGTGCTGGCCGCACAGCCCGA
CATGGAGGTCGTCGCGGAGGCGGGGAACGGTGTGGAAGCCCTGGAGGTGCTGCGCGCCACCCACGTCGACGTGATCCTCA
TGGACGTACGGATGCCGCATCTGGACGGCGTGGAGGCCACCCGCCGGATCTGCGAGGGCGGGCAGAAGGCGGACGCGCCG
AAGGTCCTCATCCTGACCACCTTCGACCTCGATGAATACGCCTTCTCCGCGCTGAAGGCCGGGGCCAGCGGCTTCATGCT
CAAGGACGTCCCGCCCGGTGACCTGCTCGCCGCGATCCGGGCGGTGCAGAGCGGCGATGCGGTCGTCGCCCCGTCCACCA
CCCGCCGGCTCCTCGACCGCTTCACCCCCATGCTGCCCGCCACCTCCGCCGAGCCGGCCCGGCCCGAGCTGGAGCGGCTG
ACGGAGCGTGAGCGGGAGGTGCTGCTGCTGGTCGCGCAGGGCCTGTCCAACGGCGAGATCGCGGCACGGCTGGTGCTCTC
GGAGGCCACGGTCAAAACCCATGTGGGCCGCATCCTCGCCAAGTTGGGCCTGCGGGACCGGGTCCAGGCGGTGGTACTCG
CGTACGAGACGGGGCTGGTGCGGGCAGGGGGAGCGGGGGCGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-120)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.071

98.678

0.405
  degU Bacillus subtilis subsp. subtilis str. 168

38.938

99.559

0.388