Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHS81_RS15405 Genome accession   NZ_CP107940
Coordinates   3508002..3509414 (+) Length   470 a.a.
NCBI ID   WP_328385340.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00400     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3503002..3514414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS81_RS15390 (OHS81_15395) - 3503924..3504850 (-) 927 WP_328385337.1 Ppx/GppA phosphatase family protein -
  OHS81_RS15395 (OHS81_15400) - 3504926..3505831 (+) 906 WP_328385338.1 hypothetical protein -
  OHS81_RS15400 (OHS81_15405) - 3505910..3507736 (-) 1827 WP_328385339.1 sigma-70 family RNA polymerase sigma factor -
  OHS81_RS15405 (OHS81_15410) radA/sms 3508002..3509414 (+) 1413 WP_328385340.1 DNA repair protein RadA Machinery gene
  OHS81_RS15410 (OHS81_15415) disA 3509539..3510663 (+) 1125 WP_328385341.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHS81_RS15415 (OHS81_15420) - 3510777..3511769 (-) 993 WP_328385342.1 NAD-dependent epimerase/dehydratase family protein -
  OHS81_RS15420 (OHS81_15425) - 3511867..3512697 (-) 831 WP_328385343.1 hypothetical protein -
  OHS81_RS15425 (OHS81_15430) - 3512857..3513381 (-) 525 WP_328385344.1 pyridoxamine 5'-phosphate oxidase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49369.52 Da        Isoelectric Point: 8.0042

>NTDB_id=649719 OHS81_RS15405 WP_328385340.1 3508002..3509414(+) (radA/sms) [Streptomyces sp. NBC_00400]
MATRKSSGKERPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAPGRVTTAAVPIGQVDGKQAIARSTGVPE
LDRVLGGGLVPGAVALLAGEPGVGKSTLLLDVAAKAASDAHRTLYVTGEESASQVRLRADRIGALDDHLYLAAETDLSAV
LGHLDTVKPSLLVLDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLH
FEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLTDPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLSEAARLGFTHALVPSDPGKIPDGMRVLEVADVGAALSVLPKRVRREAPQEEGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=649719 OHS81_RS15405 WP_328385340.1 3508002..3509414(+) (radA/sms) [Streptomyces sp. NBC_00400]
ATGGCAACGCGTAAATCCTCGGGCAAGGAGCGCCCCTCCTACCGCTGTACGGAGTGCGGCTGGACCACCGCGAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCATGGGGCACGGTCGAGGAGTTCGGCGGCGCCCCCGCGGTGCGCACGACCGCACCAG
GCCGGGTCACCACTGCGGCCGTGCCCATCGGTCAGGTCGACGGCAAGCAGGCCATCGCCCGCTCGACGGGCGTGCCCGAG
CTGGACCGCGTCCTGGGCGGCGGGCTGGTCCCCGGCGCGGTCGCGCTGCTGGCCGGCGAGCCCGGCGTCGGCAAGTCCAC
CCTCCTCCTGGACGTCGCCGCCAAGGCCGCCTCCGACGCCCACCGCACCCTGTATGTGACGGGCGAGGAGTCCGCCAGCC
AGGTCCGGCTGCGCGCCGACCGCATCGGCGCCCTCGACGACCATCTGTATCTGGCCGCGGAAACCGACCTCTCCGCCGTC
CTCGGCCACCTCGACACGGTCAAGCCCTCGCTGCTGGTCCTCGACTCCGTGCAGACCGTCGCCTCCCCCGAGATCGAGGG
CGCCCCCGGCGGTATGGCCCAGGTCCGCGAGGTGGCCGGCGCACTGATCCGGGCCTCCAAGGAACGCGGGATGTCCACCC
TCCTGGTCGGCCACGTCACCAAGGACGGCGCCATCGCCGGGCCGCGCCTGCTGGAACATCTCGTCGATGTCGTCCTGCAC
TTCGAGGGCGACCGGCATGCCCGGCTGCGCCTGGTCCGCGGCGTCAAGAACCGCTACGGCACCACCGACGAGGTCGGCTG
CTTCGAGCTCCACGACGAGGGCATCACCGGTCTCACCGACCCCTCCGGCCTCTTCCTCACCCGCCGCGCCGAACCCGTGC
CCGGTACGTGCCTGACCGTGACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAGGTCCAGGCGCTCACCGTCGACTCCCAG
ATCCCCTCCCCCCGGCGCACCACCTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTACTGGAACAGCGCGG
CCGGATCAGCGCCCTGGGCAAGCGCGACATCTACAGCGCGACGGTCGGCGGGGTGAAGCTGACCGAGCCCGCCGCCGACC
TCGCCGTCGCCCTCGCCCTCGCCAGCGCCGCCAGCGACACCCCCCTCCCCAAGAACCTCGTCGCCATCGGCGAGGTGGGC
CTCGCGGGCGAGGTCAGGCGGGTCACCGGCGTCCAGCGGCGGCTGTCCGAAGCGGCCCGCCTCGGCTTCACCCACGCCCT
GGTCCCCTCCGACCCGGGCAAGATCCCTGACGGAATGCGGGTGCTGGAGGTCGCCGACGTCGGAGCGGCCCTCAGCGTCC
TGCCCAAGCGAGTGCGCCGGGAGGCCCCACAGGAAGAGGGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

AAA domain (AAA_25)

(79-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.237

95.957

0.415
  radA Streptococcus pneumoniae D39

43.925

91.064

0.4
  radA Streptococcus pneumoniae R6

43.925

91.064

0.4
  radA Streptococcus pneumoniae Rx1

43.925

91.064

0.4
  radA Streptococcus mitis SK321

43.925

91.064

0.4
  radA Streptococcus mitis NCTC 12261

43.925

91.064

0.4
  radA Streptococcus pneumoniae TIGR4

43.925

91.064

0.4