Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS81_RS07090 Genome accession   NZ_CP107940
Coordinates   1604277..1604936 (-) Length   219 a.a.
NCBI ID   WP_328383481.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00400     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1599277..1609936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS81_RS07075 (OHS81_07075) sbnB 1599291..1600325 (-) 1035 WP_328383476.1 2,3-diaminopropionate biosynthesis protein SbnB -
  OHS81_RS07080 (OHS81_07080) - 1600359..1601381 (-) 1023 WP_328383478.1 TauD/TfdA family dioxygenase -
  OHS81_RS07085 (OHS81_07085) - 1601501..1604056 (-) 2556 WP_328383479.1 amino acid adenylation domain-containing protein -
  OHS81_RS07090 (OHS81_07090) vraR 1604277..1604936 (-) 660 WP_328383481.1 response regulator transcription factor Regulator
  OHS81_RS07095 (OHS81_07095) - 1604936..1606270 (-) 1335 WP_328383483.1 sensor histidine kinase -
  OHS81_RS07100 (OHS81_07100) - 1606569..1607009 (+) 441 WP_328383485.1 hypothetical protein -
  OHS81_RS07105 (OHS81_07105) - 1607129..1608271 (-) 1143 WP_328390955.1 aromatic acid exporter family protein -
  OHS81_RS07110 (OHS81_07110) - 1608452..1608850 (-) 399 WP_328383487.1 VOC family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23649.14 Da        Isoelectric Point: 4.7596

>NTDB_id=649693 OHS81_RS07090 WP_328383481.1 1604277..1604936(-) (vraR) [Streptomyces sp. NBC_00400]
MTIRVLIADDQAMIRGSFAVLLNAQPDIEVVGEADNGAEAVRQVAEHAPDVVLMDIRMPELDGLEATRRITGSGSLTKIL
MLTTFDLDEYVYEALRAGASGFLLKDSSAHELAAAVRTIATGGALLAPTVTKRLIEEFSKRGAPRAPRRDRVADLTERET
EVLCLIAQGLSNAELAEQLVIAEQTVKTHVGRILVKLQLRDRTQAAVYAYEAGLVVAGE

Nucleotide


Download         Length: 660 bp        

>NTDB_id=649693 OHS81_RS07090 WP_328383481.1 1604277..1604936(-) (vraR) [Streptomyces sp. NBC_00400]
ATGACGATACGCGTGCTGATCGCCGACGACCAGGCGATGATCCGGGGGAGCTTCGCGGTCCTGCTCAACGCGCAGCCGGA
CATCGAGGTCGTGGGGGAGGCGGACAACGGCGCGGAGGCCGTCCGCCAGGTGGCCGAACACGCCCCGGACGTCGTGCTGA
TGGACATCCGGATGCCGGAGCTCGACGGCCTGGAGGCCACCCGCCGCATCACCGGAAGCGGCAGCCTCACCAAGATCCTC
ATGCTCACCACCTTCGATCTGGACGAGTATGTGTACGAGGCACTGCGCGCCGGGGCCAGCGGGTTCCTGCTCAAGGACTC
CTCGGCCCACGAACTCGCCGCCGCCGTACGCACCATCGCCACCGGCGGCGCCCTGCTCGCCCCGACCGTCACCAAGCGGC
TGATCGAGGAGTTCTCCAAGCGGGGCGCACCCCGCGCGCCCCGCCGGGACCGGGTGGCGGATCTGACCGAGCGGGAGACG
GAGGTGCTGTGCCTGATCGCCCAGGGCCTGTCCAACGCCGAGCTCGCCGAGCAGCTGGTCATCGCCGAGCAGACGGTGAA
GACCCATGTCGGACGCATCCTGGTCAAGCTGCAGCTGCGCGACCGCACACAGGCGGCGGTGTACGCGTACGAAGCGGGGC
TGGTGGTCGCCGGGGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.721

98.174

0.429
  degU Bacillus subtilis subsp. subtilis str. 168

40.359

100

0.411