Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS59_RS37505 Genome accession   NZ_CP107935
Coordinates   8615394..8616056 (-) Length   220 a.a.
NCBI ID   WP_328497773.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00414     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8610394..8621056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS59_RS37485 (OHS59_37500) - 8611026..8611883 (-) 858 WP_328497770.1 alpha/beta fold hydrolase -
  OHS59_RS37490 (OHS59_37505) - 8612039..8612923 (+) 885 WP_328497771.1 RNA polymerase sigma-70 factor -
  OHS59_RS37495 (OHS59_37510) - 8613179..8613940 (+) 762 WP_328499510.1 GntR family transcriptional regulator -
  OHS59_RS37500 (OHS59_37515) - 8614100..8615257 (-) 1158 WP_328497772.1 ROK family transcriptional regulator -
  OHS59_RS37505 (OHS59_37520) vraR 8615394..8616056 (-) 663 WP_328497773.1 response regulator transcription factor Regulator
  OHS59_RS37510 (OHS59_37525) - 8616071..8617225 (-) 1155 WP_328497774.1 histidine kinase -
  OHS59_RS37515 (OHS59_37530) - 8617334..8618326 (+) 993 WP_328497775.1 ABC transporter ATP-binding protein -
  OHS59_RS37520 (OHS59_37535) - 8618329..8619060 (+) 732 WP_328497776.1 ABC transporter permease -
  OHS59_RS37525 (OHS59_37540) - 8619126..8619572 (+) 447 WP_328497777.1 hypothetical protein -
  OHS59_RS37530 (OHS59_37545) mug 8619817..8620371 (-) 555 WP_328499511.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23511.15 Da        Isoelectric Point: 5.4291

>NTDB_id=649673 OHS59_RS37505 WP_328497773.1 8615394..8616056(-) (vraR) [Streptomyces sp. NBC_00414]
MPVTVLLVDDEPLVRAGLRAILEAQPDIEVVGEAADGAAVIPLVRRLRPDVVAMDVRMPLMDGIEATRAVLRTVDRPPKI
LVVTTFENDEYVYEALRAGADGFLLKRSRPAEIVHAVRLVAEGESLLFPASVRQLAAEYGNSDGNPAARAALKRAALSER
EAEVLRLMTRGLSNAEIAARLVVGGETVKSHVSAVLSKLGARDRTQAVIAAYESGFVAPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=649673 OHS59_RS37505 WP_328497773.1 8615394..8616056(-) (vraR) [Streptomyces sp. NBC_00414]
ATGCCCGTCACCGTTCTCCTCGTAGACGACGAACCCCTCGTACGAGCCGGTCTGCGGGCCATCCTGGAGGCGCAGCCCGA
CATCGAGGTCGTCGGTGAGGCCGCCGACGGCGCGGCGGTGATCCCCCTGGTGCGGCGGCTGCGGCCCGATGTCGTCGCGA
TGGACGTCCGGATGCCGTTGATGGACGGCATCGAGGCCACCCGCGCGGTGCTGCGGACCGTCGACCGGCCGCCGAAGATC
CTCGTGGTGACGACCTTCGAGAACGACGAGTACGTGTACGAGGCGCTGCGCGCGGGCGCCGACGGCTTCCTCCTGAAGCG
GTCGCGGCCGGCCGAGATCGTGCACGCCGTGCGGCTGGTCGCCGAGGGCGAGTCACTGCTGTTCCCGGCCTCGGTACGGC
AGTTGGCCGCCGAGTACGGGAACAGTGACGGGAATCCCGCGGCCCGGGCCGCGCTGAAGCGGGCGGCGCTGAGCGAGCGC
GAGGCGGAGGTGCTGCGGCTGATGACACGGGGCCTGTCGAACGCGGAGATCGCCGCACGGCTGGTGGTCGGCGGCGAGAC
GGTGAAGTCCCACGTCAGCGCCGTACTGTCGAAGCTGGGGGCCCGGGACCGCACCCAGGCGGTGATCGCGGCGTACGAGT
CGGGGTTCGTGGCACCCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.284

99.091

0.409
  degU Bacillus subtilis subsp. subtilis str. 168

35.841

100

0.368