Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHS59_RS25300 Genome accession   NZ_CP107935
Coordinates   5820424..5821833 (-) Length   469 a.a.
NCBI ID   WP_107022363.1    Uniprot ID   A0A2P8PTK2
Organism   Streptomyces sp. NBC_00414     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5815424..5826833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS59_RS25280 (OHS59_25290) - 5816057..5816614 (-) 558 WP_328495681.1 SigE family RNA polymerase sigma factor -
  OHS59_RS25285 (OHS59_25295) - 5816872..5817801 (-) 930 WP_328495682.1 A/G-specific adenine glycosylase -
  OHS59_RS25290 (OHS59_25300) - 5818050..5818886 (+) 837 WP_328495683.1 hypothetical protein -
  OHS59_RS25295 (OHS59_25305) disA 5819229..5820353 (-) 1125 WP_107022362.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHS59_RS25300 (OHS59_25310) radA/sms 5820424..5821833 (-) 1410 WP_107022363.1 DNA repair protein RadA Machinery gene
  OHS59_RS25305 (OHS59_25315) - 5822067..5823986 (+) 1920 WP_328495684.1 hypothetical protein -
  OHS59_RS25310 (OHS59_25320) - 5824090..5825004 (-) 915 WP_328495685.1 hypothetical protein -
  OHS59_RS25315 (OHS59_25325) - 5825076..5826008 (+) 933 WP_328495686.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49818.96 Da        Isoelectric Point: 7.7064

>NTDB_id=649651 OHS59_RS25300 WP_107022363.1 5820424..5821833(-) (radA/sms) [Streptomyces sp. NBC_00414]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCSECQAWGTVEEYGAPAVRTTAPGRVTTNALPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYITGEESASQVRLRADRIKAIDDNLFLAAETDLSAVL
GHLDAVKPSLLIVDSVQTVASPEIDGAPGGMSQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLTDPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDTQI
PTPRRTTSGLETSRVQMMLAVLEQRGRISALGKRDIYTATVGGVKLSEPAADLAIALALASAASDTPLPQNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKIPPGMKVLEVADMGDALRVLPRSRRRDAPRDEEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=649651 OHS59_RS25300 WP_107022363.1 5820424..5821833(-) (radA/sms) [Streptomyces sp. NBC_00414]
ATGGCTGCCCGTACGAAGACCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAATGGCT
CGGCCGCTGCTCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCCGTGCGTACGACGGCCCCCGGCC
GCGTCACCACGAACGCGCTGCCCATCGGCCAGGTCGACGGACGGCAGGCGACCGCCCGCTCGACCGGTGTGCCCGAGCTG
GACCGCGTCCTCGGCGGCGGCCTCGTACCGGGCGCGGTGGTGCTCGTGGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCT
GCTGCTGGACGTGGCGGCCAAGGCGGCGAGCGACGAGCACCGCACGCTCTACATCACGGGTGAGGAGTCGGCCAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAAGGCGATCGACGACAATCTGTTCCTGGCGGCGGAGACCGATCTGTCCGCGGTCCTC
GGTCACCTGGACGCGGTGAAGCCGTCCCTGCTCATCGTCGACTCCGTGCAGACGGTGGCCTCTCCGGAGATCGACGGCGC
CCCGGGAGGCATGTCCCAGGTCCGTGAGGTGGCCGGGGCCCTGATCCGCGCCTCCAAGGAGCGCGGCATGGCGACCCTCC
TGGTCGGCCATGTCACCAAGGACGGCGCCATCGCCGGACCGCGTCTCCTGGAGCACCTCGTGGACGTCGTCCTGAGCTTC
GAGGGCGACCGGCACGCGCGCCTGCGTCTCGTACGGGGCGTCAAGAACCGGTACGGCACCACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGGATCACCGGGCTCACCGACCCCTCCGGCCTGTTCCTCACCCGGCGGGCCGAGCCCGTCCCCG
GCACCTGTCTGACCGTCACCCTCGAAGGCCGCCGCCCCCTGGTGGCCGAGGTGCAGGCGCTCACCGTGGACACCCAGATC
CCCACCCCGCGGCGTACGACCTCCGGTCTGGAGACCTCCCGGGTCCAGATGATGCTCGCCGTCCTGGAGCAGCGCGGCCG
GATCAGCGCCCTCGGGAAGCGGGACATCTACACCGCGACGGTCGGTGGCGTGAAGCTGTCCGAGCCCGCCGCGGACCTCG
CGATCGCGCTCGCGCTGGCCAGTGCGGCGAGCGACACCCCGCTCCCGCAGAACCTCGTCGCGATCGGTGAAGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCAGACTCGCCGAAGCCCACCGGCTGGGCTTCACCCACGCCCTCGT
CCCGAGCGACCCGGGCAAGATCCCTCCGGGTATGAAGGTCCTGGAAGTCGCCGACATGGGGGACGCGCTTCGGGTCCTCC
CGAGGTCGCGTCGGCGAGACGCCCCACGGGACGAGGAAGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P8PTK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

96.588

0.424
  radA Streptococcus mitis SK321

43.111

95.949

0.414
  radA Streptococcus mitis NCTC 12261

43.111

95.949

0.414
  radA Streptococcus pneumoniae Rx1

42.667

95.949

0.409
  radA Streptococcus pneumoniae D39

42.667

95.949

0.409
  radA Streptococcus pneumoniae R6

42.667

95.949

0.409
  radA Streptococcus pneumoniae TIGR4

42.667

95.949

0.409