Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS82_RS35915 Genome accession   NZ_CP107928
Coordinates   8151876..8152511 (-) Length   211 a.a.
NCBI ID   WP_075662383.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00425     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8146876..8157511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS82_RS35895 (OHS82_35915) - 8147541..8148545 (-) 1005 WP_266719415.1 fumarylacetoacetate hydrolase family protein -
  OHS82_RS35900 (OHS82_35920) - 8148675..8149610 (+) 936 WP_266719413.1 LysR family transcriptional regulator -
  OHS82_RS35905 (OHS82_35925) - 8149912..8150475 (-) 564 WP_266719410.1 QsdR family transcriptional regulator -
  OHS82_RS35910 (OHS82_35930) - 8150567..8151472 (+) 906 WP_328435263.1 DUF1295 domain-containing protein -
  OHS82_RS35915 (OHS82_35935) vraR 8151876..8152511 (-) 636 WP_075662383.1 response regulator transcription factor Regulator
  OHS82_RS35920 (OHS82_35940) - 8152530..8153777 (-) 1248 WP_266719402.1 sensor histidine kinase -
  OHS82_RS35925 (OHS82_35945) - 8153993..8154196 (+) 204 WP_266719400.1 hypothetical protein -
  OHS82_RS35930 (OHS82_35950) - 8154208..8155896 (+) 1689 WP_266719398.1 molybdopterin-dependent oxidoreductase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22425.86 Da        Isoelectric Point: 6.6509

>NTDB_id=649576 OHS82_RS35915 WP_075662383.1 8151876..8152511(-) (vraR) [Streptomyces sp. NBC_00425]
MTVHILIVDDHPVVRFGLRGMLEAYEDLRVVGEAGSGDEAIVLASTTRPDVVLMDLRMPGTDGATATARIRQEHPGIRVL
VLTTYEGDADILPAIEAGATGYLLKDTPIGTLTDAIRAAARGETVLAPPVAARLVTRLQAPAGEQLTPREVQVLGLVARG
LSNSEIGRQLYIGEATVKTHLLRTFVKLGVNDRTAAVTVALSRGVLTSPHR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=649576 OHS82_RS35915 WP_075662383.1 8151876..8152511(-) (vraR) [Streptomyces sp. NBC_00425]
ATGACTGTCCACATCCTGATTGTCGATGACCATCCCGTCGTACGCTTCGGCCTCCGCGGCATGCTCGAGGCCTACGAGGA
CCTGCGGGTCGTCGGCGAGGCCGGCTCCGGCGACGAGGCGATCGTCCTTGCCTCCACGACGCGCCCGGATGTCGTCCTGA
TGGACCTGCGGATGCCGGGTACCGATGGCGCCACCGCAACGGCGCGCATCCGTCAGGAGCACCCCGGCATTCGCGTGCTC
GTGCTGACCACCTACGAAGGTGACGCCGACATCCTGCCGGCGATCGAGGCCGGCGCCACCGGATACCTGCTCAAGGACAC
CCCGATCGGTACTCTGACCGACGCGATCCGGGCGGCAGCCCGCGGTGAAACCGTCCTCGCCCCGCCGGTGGCCGCACGGC
TGGTGACTCGCCTTCAGGCGCCGGCCGGGGAGCAGCTGACCCCACGCGAGGTTCAGGTACTCGGCCTCGTCGCGCGGGGT
CTGTCCAACAGCGAGATCGGTCGGCAGCTGTACATCGGCGAAGCGACGGTGAAGACGCACCTGCTGCGAACGTTCGTCAA
ACTGGGTGTCAACGACCGCACCGCAGCCGTCACCGTCGCTCTCTCGCGCGGCGTCCTCACCTCACCACACCGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(145-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.827

98.578

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

36.199

100

0.379