Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS82_RS32775 Genome accession   NZ_CP107928
Coordinates   7452921..7453562 (+) Length   213 a.a.
NCBI ID   WP_057582300.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00425     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7447921..7458562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS82_RS32755 (OHS82_32765) - 7448555..7449280 (-) 726 WP_057582296.1 transglycosylase SLT domain-containing protein -
  OHS82_RS32760 (OHS82_32770) - 7449739..7450848 (-) 1110 WP_057582297.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OHS82_RS32765 (OHS82_32775) - 7450845..7451543 (-) 699 WP_057582298.1 SDR family oxidoreductase -
  OHS82_RS32770 (OHS82_32780) - 7451783..7452928 (+) 1146 WP_057582299.1 GAF domain-containing sensor histidine kinase -
  OHS82_RS32775 (OHS82_32785) vraR 7452921..7453562 (+) 642 WP_057582300.1 response regulator transcription factor Regulator
  OHS82_RS32780 (OHS82_32790) - 7453717..7453962 (+) 246 WP_057582301.1 chaplin -
  OHS82_RS32785 (OHS82_32795) - 7454154..7454393 (+) 240 WP_057582302.1 chaplin -
  OHS82_RS32790 (OHS82_32800) - 7454508..7455296 (-) 789 WP_328435083.1 hypothetical protein -
  OHS82_RS32795 (OHS82_32805) - 7455450..7456247 (+) 798 WP_057582304.1 ABC transporter ATP-binding protein -
  OHS82_RS32800 (OHS82_32810) - 7456301..7456732 (+) 432 WP_057582305.1 NfeD family protein -
  OHS82_RS32805 (OHS82_32815) - 7456875..7457843 (+) 969 WP_328435084.1 SPFH domain-containing protein -
  OHS82_RS32810 (OHS82_32820) - 7457908..7458414 (-) 507 WP_057582307.1 HNH endonuclease -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22895.16 Da        Isoelectric Point: 4.9938

>NTDB_id=649571 OHS82_RS32775 WP_057582300.1 7452921..7453562(+) (vraR) [Streptomyces sp. NBC_00425]
MADPIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGADGVALAEELRPDVVLMDVKMPGMDGVEALRKLRDLDNPAR
VLIVTSFTERRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVADALLSQEESGSGQGRGGSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGVAG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=649571 OHS82_RS32775 WP_057582300.1 7452921..7453562(+) (vraR) [Streptomyces sp. NBC_00425]
GTGGCTGACCCAATCAAGGTGCTGCTCGTCGACGACCACCAGGTCGTCCGCCGGGGTCTGCGCACCTTCCTGGAGGTGCA
GGACGACATAGAGGTCGTCGGCGAGGCCGCCGACGGCGCGGACGGGGTCGCCCTCGCCGAGGAGCTGAGACCCGACGTCG
TCCTGATGGACGTCAAGATGCCCGGGATGGACGGTGTCGAGGCGCTGCGCAAGCTCCGCGATCTCGACAACCCCGCGCGT
GTGCTGATCGTCACCAGCTTCACCGAACGGCGCACGGTGGTCCCCGCCCTGCGCGCGGGCGCCGCCGGGTACGTCTACAA
GGACGTGGACCCCGACGCCCTGGCCGGCGCCATCCGCTCGGTGCACGCCGGCCACATCCTGCTGCAGCCCGAGGTGGCCG
ACGCACTCCTGTCCCAGGAGGAGAGCGGCTCGGGCCAGGGAAGGGGCGGCTCGCTCACCGAACGCGAACGCGAGGTGCTC
GGCCTGATCGCGGACGGCAGGTCCAACCGGGAGATCGCCCGCGCGCTGGTGCTCTCCGAGAAGACCGTCAAGACGCATGT
CTCCAACATCCTGATGAAGCTCGACCTGGCGGACCGCACCCAGGCCGCACTGTGGGCGGTCCGCCACGGAGTGGCCGGCT
GA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.635

97.653

0.455
  degU Bacillus subtilis subsp. subtilis str. 168

38.009

100

0.394