Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS82_RS20020 Genome accession   NZ_CP107928
Coordinates   4677269..4677937 (-) Length   222 a.a.
NCBI ID   WP_057577899.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00425     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4672269..4682937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS82_RS19995 (OHS82_20005) - 4672297..4672794 (-) 498 WP_266725144.1 MarR family transcriptional regulator -
  OHS82_RS20000 (OHS82_20010) - 4672868..4673761 (+) 894 WP_328434235.1 ABC transporter ATP-binding protein -
  OHS82_RS20005 (OHS82_20015) - 4673758..4675341 (+) 1584 WP_107105185.1 ABC transporter permease -
  OHS82_RS20010 (OHS82_20020) - 4675557..4675829 (+) 273 WP_199863754.1 hypothetical protein -
  OHS82_RS20015 (OHS82_20025) - 4675812..4677029 (-) 1218 WP_057577898.1 cytochrome P450 -
  OHS82_RS20020 (OHS82_20030) vraR 4677269..4677937 (-) 669 WP_057577899.1 response regulator transcription factor Regulator
  OHS82_RS20025 (OHS82_20035) - 4677934..4679325 (-) 1392 WP_107105198.1 histidine kinase -
  OHS82_RS20030 (OHS82_20040) - 4679451..4679761 (-) 311 Protein_3979 response regulator transcription factor -
  OHS82_RS20035 (OHS82_20045) - 4679808..4679996 (-) 189 WP_157876330.1 hypothetical protein -
  OHS82_RS20040 (OHS82_20050) - 4680007..4681239 (-) 1233 WP_328434236.1 acyltransferase -
  OHS82_RS20045 (OHS82_20055) - 4681232..4682182 (-) 951 WP_328436084.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23971.64 Da        Isoelectric Point: 4.7428

>NTDB_id=649549 OHS82_RS20020 WP_057577899.1 4677269..4677937(-) (vraR) [Streptomyces sp. NBC_00425]
MTIRVLIADDQMMVREGFSVLLNAMPDIEVVGEAVNGREAVHRVRELAPDVVLMDIRMPELNGIEATREIVAADGSAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTRRLITEFSKLSDTPGSVRAALQASYGDLT
ERETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=649549 OHS82_RS20020 WP_057577899.1 4677269..4677937(-) (vraR) [Streptomyces sp. NBC_00425]
ATGACGATCCGGGTACTGATCGCCGACGACCAGATGATGGTCCGCGAGGGCTTCTCGGTCCTGCTGAACGCGATGCCGGA
CATCGAGGTGGTGGGCGAGGCGGTGAACGGCCGGGAGGCGGTGCACCGGGTCCGCGAGCTGGCCCCCGACGTGGTCCTGA
TGGACATCCGCATGCCGGAGTTGAACGGCATCGAGGCGACGCGGGAGATCGTCGCCGCCGACGGCTCGGCGAAGGTCCTC
GTCCTGACCACCTTCGACCTGGACGAGTACGTCTACCAGGCGCTCCGCGCGGGAGCCTCCGGCTTCCTCCTGAAGGACGC
CTCGGCCCGCCAGCTGGCGGACGGCGTGCGGGTGGTGGCGGCCGGCGAGGCGCTGCTCGCCCCTTCCGTCACCAGGCGTC
TGATCACGGAGTTCTCCAAACTGTCGGACACCCCGGGGTCGGTCCGCGCGGCCCTCCAGGCGTCCTACGGCGACCTGACC
GAACGGGAGACGGAGGTCCTGGTCCTCATCGCCCAGGGACTGTCGAACGCGGAGATCGCCGAGCGGCTGGTGGTGGCGGA
GTCGACCATCAAGACGCACGTGAGCAGAATCCTGGTGAAGCTGGGCCTGCGGGACCGCACCCAGGCGGCGGTGTTCGCCT
ACGAGGCAAGACTGGTGACACCGGGATAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(159-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.205

98.649

0.446
  degU Bacillus subtilis subsp. subtilis str. 168

42.661

98.198

0.419